Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   I6H78_RS08150 Genome accession   NZ_CP066059
Coordinates   1660726..1661415 (-) Length   229 a.a.
NCBI ID   WP_001106859.1    Uniprot ID   J4NPG5
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1658823..1664947 1660726..1661415 within 0


Gene organization within MGE regions


Location: 1658823..1664947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS08145 (I6H78_08145) scnK 1659415..1660725 (-) 1311 WP_198459360.1 sensor histidine kinase Regulator
  I6H78_RS08150 (I6H78_08150) scnR 1660726..1661415 (-) 690 WP_001106859.1 response regulator transcription factor Regulator
  I6H78_RS08155 (I6H78_08155) - 1661587..1662495 (+) 909 WP_125841443.1 ABC transporter ATP-binding protein -
  I6H78_RS08160 (I6H78_08160) - 1662495..1663235 (+) 741 WP_008809654.1 ABC transporter permease -
  I6H78_RS08165 (I6H78_08165) - 1663232..1663960 (+) 729 WP_198459361.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26252.60 Da        Isoelectric Point: 6.5039

>NTDB_id=516992 I6H78_RS08150 WP_001106859.1 1660726..1661415(-) (scnR) [Streptococcus oralis strain FDAARGOS_1021]
MNYKEKKILILDDNPEILEIVQESLSIAGFSNLTSVQSQKEALEQFEEKSFDLVILDIMLPEGSGFEVLKGIRKTSMVPV
LFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAYPEKEDTLVLPACQVHFSQALITKGKLEIQLTAKEY
SILKVLYDNKNRIVTFDQLLEKVWGLQYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=516992 I6H78_RS08150 WP_001106859.1 1660726..1661415(-) (scnR) [Streptococcus oralis strain FDAARGOS_1021]
ATGAATTATAAAGAAAAGAAGATCTTAATTTTAGACGATAACCCAGAAATTTTAGAAATAGTGCAAGAATCATTGAGCAT
TGCTGGGTTTAGCAATCTAACAAGTGTACAATCACAAAAAGAAGCTTTGGAGCAATTTGAAGAAAAATCTTTTGATTTAG
TTATTTTAGACATTATGCTGCCTGAAGGATCAGGATTTGAAGTTTTAAAGGGCATCCGTAAGACTTCAATGGTTCCTGTT
TTGTTTTTGTCGGCAATCTCCGATATAGAAAAACAATATCAGGGCTTTGAGTTAGGGGCAGATGACTATATTATCAAGCC
TTTCCGTCCAAGAGATTTGGAGTTGCGTATTCTTTCCATCCTAAAAAGAGCCTATCCCGAAAAGGAAGATACCCTTGTTT
TGCCTGCTTGCCAGGTGCATTTTAGCCAAGCCTTGATTACCAAAGGAAAACTAGAGATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAGGTCTTATATGATAATAAGAATCGCATTGTCACTTTTGACCAACTCTTAGAAAAGGTCTGGGGATTACA
ATACCAAGGCTATGATAATACCCTAATGGCTCATATTCGTAAGATTCGACAAAAGATTGAAGCCAATCCTTCTAAACCAG
AAAGCTTAATAACGGTTAAAGGTTTGGGTTACAAACTAAAGGTGAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J4NPG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

86.463

100

0.865
  micA Streptococcus pneumoniae Cp1015

38.627

100

0.393
  vicR Streptococcus mutans UA159

37.5

100

0.38