Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KZO18_RS14275 Genome accession   NZ_CP080085
Coordinates   2919017..2919685 (-) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain 19SZHZ869Rt     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2914017..2924685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO18_RS14245 (KZO18_14220) rfaQ 2914195..2915253 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  KZO18_RS14250 (KZO18_14225) waaA 2915666..2916943 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  KZO18_RS14255 (KZO18_14230) coaD 2916951..2917430 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  KZO18_RS14260 (KZO18_14235) mutM 2917469..2918278 (-) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  KZO18_RS14265 (KZO18_14240) rpmG 2918376..2918543 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  KZO18_RS14270 (KZO18_14245) rpmB 2918564..2918800 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  KZO18_RS14275 (KZO18_14250) radC 2919017..2919685 (-) 669 WP_001298959.1 DNA repair protein RadC Machinery gene
  KZO18_RS14280 (KZO18_14255) coaBC 2919857..2921077 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  KZO18_RS14285 (KZO18_14260) dut 2921055..2921513 (+) 459 WP_000976070.1 dUTP diphosphatase -
  KZO18_RS14290 (KZO18_14265) slmA 2921620..2922216 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  KZO18_RS14295 (KZO18_14270) pyrE 2922253..2922894 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  KZO18_RS14300 (KZO18_14275) rph 2922960..2923676 (-) 717 WP_001247093.1 ribonuclease PH -
  KZO18_RS14305 (KZO18_14280) yicC 2923803..2924666 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=516953 KZO18_RS14275 WP_001298959.1 2919017..2919685(-) (radC) [Escherichia coli strain 19SZHZ869Rt]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=516953 KZO18_RS14275 WP_001298959.1 2919017..2919685(-) (radC) [Escherichia coli strain 19SZHZ869Rt]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496