Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6H72_RS04540 Genome accession   NZ_CP066055
Coordinates   921070..923028 (-) Length   652 a.a.
NCBI ID   WP_198458374.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 916070..928028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS04505 (I6H72_04505) - 917305..917670 (-) 366 WP_003025907.1 Asp23/Gls24 family envelope stress response protein -
  I6H72_RS04510 (I6H72_04510) rpmB 917864..918052 (-) 189 WP_003025909.1 50S ribosomal protein L28 -
  I6H72_RS04515 (I6H72_04515) - 918187..918849 (-) 663 WP_003070318.1 LiaF transmembrane domain-containing protein -
  I6H72_RS04520 (I6H72_04520) - 918855..919301 (-) 447 WP_003025913.1 LytTR family DNA-binding domain-containing protein -
  I6H72_RS04530 (I6H72_04530) - 919733..920614 (-) 882 WP_003070319.1 class II fructose-bisphosphate aldolase -
  I6H72_RS04540 (I6H72_04540) amiA 921070..923028 (-) 1959 WP_198458374.1 peptide ABC transporter substrate-binding protein Regulator
  I6H72_RS04545 (I6H72_04545) mraY 923423..924406 (-) 984 WP_198458375.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  I6H72_RS04550 (I6H72_04550) pbp2X 924408..926666 (-) 2259 WP_037597792.1 penicillin-binding protein PBP2X -
  I6H72_RS04555 (I6H72_04555) ftsL 926670..926987 (-) 318 WP_003070323.1 cell division protein FtsL -
  I6H72_RS04560 (I6H72_04560) rsmH 926996..927946 (-) 951 WP_006270105.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72503.76 Da        Isoelectric Point: 8.4354

>NTDB_id=516852 I6H72_RS04540 WP_198458374.1 921070..923028(-) (amiA) [Streptococcus constellatus strain FDAARGOS_1015]
MKSSKWIIATGVVLSTGILLAGCGKSTSNTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDRYGNLVPALAK
SWTVSKDGLTYTYKLRKDAKWYTSEGEEYAGVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
VDDYTVQYTLRRTEPYWNSKTTNNILFPVNADFLKSQGKNFGSVKPSSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGVYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKSSTQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGAAKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLTD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGADNVVIDIQQMSSDELNNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNTKNGGSLQNFGLEPGQENAKIKAVGLDTYTTMLEEANAETNETKRYE
KYAEAQAWLIDSALTMPNLSLGGTPSVTKTVPFSRSCSLVGIKGGSSNYFKYVKLQDKIVTTKEYESAKKKWLKEKEASN
QKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=516852 I6H72_RS04540 WP_198458374.1 921070..923028(-) (amiA) [Streptococcus constellatus strain FDAARGOS_1015]
ATGAAATCATCAAAATGGATTATTGCAACAGGAGTTGTGCTAAGCACTGGAATCTTATTAGCAGGTTGTGGCAAGTCAAC
TTCTAATACGTCAACATACTCATATGTGTATACACAAGATCCAGACACGTTGAATTATCTAATGGCTAATCGTGCGACAA
CTTCAGATGTTGTGACCAATTTAGTTGATGGATTATTAGAAAATGACCGATACGGAAACTTAGTTCCAGCACTCGCTAAG
TCATGGACAGTCTCCAAAGATGGTTTGACCTATACCTATAAATTACGTAAAGACGCAAAATGGTACACATCAGAAGGTGA
AGAGTACGCAGGTGTAAAAGCACAAGACTTTGTGACAGGTTTGAAATATGCTGCAGATAATAAATCTGAAGCCCTTTACC
TTGTGCAAGATTCTGTCAAAGGATTAGATGCGTATATCAAAGGGGAGACAAAAGATTTTTCAACAGTTGGTGTGAAAGCT
GTAGATGATTATACAGTACAGTATACTTTAAGGCGTACGGAACCTTATTGGAATTCAAAAACAACTAATAATATTCTCTT
TCCAGTAAATGCGGACTTTTTGAAATCGCAAGGAAAGAATTTTGGTTCTGTGAAACCGAGTAGCATTCTTTACAACGGTC
CATATCTGCTGAAGTCTTTGACGGCTAAATCCTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CACTTGGACAATATCAAATTGACTTATTATGATGGATCGGACCAAGAAGCGCTTATCCGAAACTTCACAGATGGCGTCTA
TAGTGCGGCTCGTCTCTATCCAAATAGTTCAAGTTTTGCTTCTGTCAAGAAACAATATGCCAACAATATCATCTATAGTT
TACAAGATGCAACTAGTTATTATTACAATTTTAACTTAAATCGTCAGTCTTACAATCACACATCTAAGAAAACAGATGCT
CAAAAATCTTCAACGCAAGAAGCGGTACTAAACAAAGCCTTTCGTCAAGCTATCAACTTTGCTTATAACCGCACTTCTTA
CGGTGCACAAAGTAATGGGAAAGATGGTGCAGCAAAGGTGTTGCGGAACACGCTCGTGCCACCAACATTTGTTTCCATTG
GAGATAAGACTTTTGGCGATGTGGTATCCTCTAAGTTAGTAAATTATGGTTCAGAATGGTCTAATATGAATCTGACTGAT
GCGCAAGATGCTTACTACAATCCAGAAAAAGCAAAAGCTAAATTTGCTCAGGCAAAAGCAGAATTGCAAGCCAAAGGTGT
TCAATTTCCCATTCACTTAGACGTACCAGCTGATCAAACTAGTAAAATCGGTGTTCAGTGGGAAAGTTCTATGAAACAAT
CTGTTGAGTCTGTCTTAGGAGCCGATAATGTTGTGATTGATATTCAGCAGATGAGCTCAGATGAACTGAATAATATCAGT
TATTTTGCCAATACTGCCGCTCAAAAAGATTATGATTTGTACAATGGCGGTTGGTCAGGAGACTATCAAGACCCATCCAC
TTATCTAGATACCTTGAATACTAAAAATGGTGGTAGTTTGCAGAACTTTGGCTTAGAACCAGGTCAAGAGAATGCTAAGA
TAAAGGCTGTTGGTTTGGATACCTATACTACAATGCTTGAGGAAGCAAATGCTGAAACCAATGAGACGAAACGTTATGAA
AAATATGCTGAAGCACAAGCGTGGTTGATTGATAGTGCTTTGACAATGCCTAATCTCTCTCTTGGAGGGACTCCGTCTGT
GACAAAGACTGTTCCGTTTAGTCGTTCTTGCTCTCTGGTAGGGATTAAAGGTGGTTCAAGCAACTACTTTAAATATGTTA
AATTACAAGATAAAATTGTGACGACTAAAGAATACGAAAGTGCTAAAAAGAAATGGCTGAAAGAAAAAGAAGCGTCTAAT
CAAAAAGCACAAGATGATTATGAAAATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.143

100

0.586
  amiA3 Streptococcus thermophilus LMD-9

57.382

100

0.578
  amiA3 Streptococcus thermophilus LMG 18311

57.23

100

0.577