Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6I31_RS04600 Genome accession   NZ_CP066042
Coordinates   959433..959942 (+) Length   169 a.a.
NCBI ID   WP_115314060.1    Uniprot ID   A0A380H967
Organism   Staphylococcus saccharolyticus strain FDAARGOS_1074     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 957891..974710 959433..959942 within 0


Gene organization within MGE regions


Location: 957891..974710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I31_RS04590 (I6I31_04590) - 957891..958706 (-) 816 WP_115314062.1 GH25 family lysozyme -
  I6I31_RS04595 (I6I31_04595) rpsF 959115..959411 (+) 297 WP_115314061.1 30S ribosomal protein S6 -
  I6I31_RS04600 (I6I31_04600) ssbA 959433..959942 (+) 510 WP_115314060.1 single-stranded DNA-binding protein Machinery gene
  I6I31_RS04605 (I6I31_04605) rpsR 959989..960231 (+) 243 WP_001831354.1 30S ribosomal protein S18 -
  I6I31_RS04610 (I6I31_04610) - 960377..961597 (-) 1221 WP_115314059.1 site-specific integrase -
  I6I31_RS04615 (I6I31_04615) - 961621..961854 (-) 234 WP_002468636.1 hypothetical protein -
  I6I31_RS04620 (I6I31_04620) - 961885..962580 (-) 696 WP_115314058.1 helix-turn-helix domain-containing protein -
  I6I31_RS04625 (I6I31_04625) - 962724..962936 (+) 213 WP_115314057.1 helix-turn-helix transcriptional regulator -
  I6I31_RS04630 (I6I31_04630) - 962937..963209 (+) 273 WP_115314056.1 helix-turn-helix domain-containing protein -
  I6I31_RS04635 (I6I31_04635) - 963225..963380 (+) 156 WP_165417851.1 hypothetical protein -
  I6I31_RS04640 (I6I31_04640) - 963385..963597 (+) 213 WP_115314055.1 type II toxin-antitoxin system antitoxin TscA -
  I6I31_RS04645 (I6I31_04645) - 963599..963955 (+) 357 WP_002468640.1 hypothetical protein -
  I6I31_RS04650 (I6I31_04650) - 963959..964300 (+) 342 WP_002468657.1 hypothetical protein -
  I6I31_RS04655 (I6I31_04655) - 964394..965266 (+) 873 WP_002468648.1 primase alpha helix C-terminal domain-containing protein -
  I6I31_RS04660 (I6I31_04660) - 965279..966745 (+) 1467 WP_115314054.1 virulence-associated E family protein -
  I6I31_RS04665 (I6I31_04665) - 967039..967401 (+) 363 WP_075778672.1 pathogenicity island protein -
  I6I31_RS04670 (I6I31_04670) - 967403..967684 (+) 282 WP_002502284.1 hypothetical protein -
  I6I31_RS04675 (I6I31_04675) - 967686..968330 (+) 645 WP_115314053.1 pathogenicity island protein -
  I6I31_RS04680 (I6I31_04680) - 968327..968911 (+) 585 WP_115314052.1 hypothetical protein -
  I6I31_RS04685 (I6I31_04685) - 969280..969612 (+) 333 WP_002502287.1 hypothetical protein -
  I6I31_RS04690 (I6I31_04690) - 969691..970278 (+) 588 WP_002473138.1 hypothetical protein -
  I6I31_RS04695 (I6I31_04695) - 970278..970493 (+) 216 WP_002473135.1 hypothetical protein -
  I6I31_RS04700 (I6I31_04700) - 970535..971107 (+) 573 WP_115314051.1 terminase small subunit -
  I6I31_RS04705 (I6I31_04705) - 971240..971428 (+) 189 WP_115314050.1 hypothetical protein -
  I6I31_RS04710 (I6I31_04710) - 971569..972186 (+) 618 WP_002447710.1 CadD family cadmium resistance transporter -
  I6I31_RS04715 (I6I31_04715) - 972205..972552 (+) 348 WP_002447711.1 metalloregulator ArsR/SmtB family transcription factor -
  I6I31_RS04720 (I6I31_04720) - 974039..974710 (+) 672 WP_115314049.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18697.27 Da        Isoelectric Point: 4.7078

>NTDB_id=516695 I6I31_RS04600 WP_115314060.1 959433..959942(+) (ssbA) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQLDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=516695 I6I31_RS04600 WP_115314060.1 959433..959942(+) (ssbA) [Staphylococcus saccharolyticus strain FDAARGOS_1074]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTTATTAACTGTGTTGTCT
TCCGTAGACAAGCAGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGTGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAGGCGGCCAACGTTCGCAGAACAATAATTTCCAAGACTATGGTCAAGGATTTGGTGGCCAACAATCAGGAC
AAAATACGTCTTATAATAACAATAACTCATCAAACTCTAATCAATTAGATAATCCATTTGCTAACGCTAATGGCCCGATT
GATATTAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380H967

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379