NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	I6I31_RS04600	Genome accession	NZ_CP066042
Coordinates	959433..959942 (+)	Length	169 a.a.
NCBI ID	WP_115314060.1	Uniprot ID	A0A380H967
Organism	Staphylococcus saccharolyticus strain FDAARGOS_1074
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 954433..964942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I31_RS04570 (I6I31_04570)	-	954766..955641 (+)	876	WP_115314066.1	mechanosensitive ion channel family protein	-
I6I31_RS04575 (I6I31_04575)	-	955669..955872 (+)	204	WP_115314065.1	DUF951 domain-containing protein	-
I6I31_RS04580 (I6I31_04580)	ychF	955884..956981 (+)	1098	WP_115314064.1	redox-regulated ATPase YchF	-
I6I31_RS04585 (I6I31_04585)	-	957627..957818 (-)	192	WP_115314063.1	hypothetical protein	-
I6I31_RS04590 (I6I31_04590)	-	957891..958706 (-)	816	WP_115314062.1	GH25 family lysozyme	-
I6I31_RS04595 (I6I31_04595)	rpsF	959115..959411 (+)	297	WP_115314061.1	30S ribosomal protein S6	-
I6I31_RS04600 (I6I31_04600)	ssbA	959433..959942 (+)	510	WP_115314060.1	single-stranded DNA-binding protein	Machinery gene
I6I31_RS04605 (I6I31_04605)	rpsR	959989..960231 (+)	243	WP_001831354.1	30S ribosomal protein S18	-
I6I31_RS04610 (I6I31_04610)	-	960377..961597 (-)	1221	WP_115314059.1	site-specific integrase	-
I6I31_RS04615 (I6I31_04615)	-	961621..961854 (-)	234	WP_002468636.1	hypothetical protein	-
I6I31_RS04620 (I6I31_04620)	-	961885..962580 (-)	696	WP_115314058.1	helix-turn-helix domain-containing protein	-
I6I31_RS04625 (I6I31_04625)	-	962724..962936 (+)	213	WP_115314057.1	helix-turn-helix transcriptional regulator	-
I6I31_RS04630 (I6I31_04630)	-	962937..963209 (+)	273	WP_115314056.1	helix-turn-helix domain-containing protein	-
I6I31_RS04635 (I6I31_04635)	-	963225..963380 (+)	156	WP_165417851.1	hypothetical protein	-
I6I31_RS04640 (I6I31_04640)	-	963385..963597 (+)	213	WP_115314055.1	type II toxin-antitoxin system antitoxin TscA	-
I6I31_RS04645 (I6I31_04645)	-	963599..963955 (+)	357	WP_002468640.1	hypothetical protein	-
I6I31_RS04650 (I6I31_04650)	-	963959..964300 (+)	342	WP_002468657.1	hypothetical protein	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18697.27 Da Isoelectric Point: 4.7078

                                >NTDB_id=516695 I6I31_RS04600 WP_115314060.1 959433..959942(+) (ssbA) [Staphylococcus saccharolyticus strain FDAARGOS_1074]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQLDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=516695 I6I31_RS04600 WP_115314060.1 959433..959942(+) (ssbA) [Staphylococcus saccharolyticus strain FDAARGOS_1074]

ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC

GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTTATTAACTGTGTTGTCT

TCCGTAGACAAGCAGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGTGTTGATGGTCGCATACAATCACGT

AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA

TGCACAACAAGGCGGCCAACGTTCGCAGAACAATAATTTCCAAGACTATGGTCAAGGATTTGGTGGCCAACAATCAGGAC

AAAATACGTCTTATAATAACAATAACTCATCAAACTCTAATCAATTAGATAATCCATTTGCTAACGCTAATGGCCCGATT

GATATTAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	64.607	100	0.68
ssb	Latilactobacillus sakei subsp. sakei 23K	55.747	100	0.574
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379

Detailed information NTG0516695