Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6I32_RS08500 Genome accession   NZ_CP066041
Coordinates   1763681..1765639 (+) Length   652 a.a.
NCBI ID   WP_198464510.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1758681..1770639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS08475 (I6I32_08475) - 1758824..1759336 (+) 513 WP_198464506.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  I6I32_RS08480 (I6I32_08480) - 1759320..1759970 (+) 651 WP_198464507.1 DUF1803 domain-containing protein -
  I6I32_RS08485 (I6I32_08485) - 1760072..1760272 (+) 201 WP_000051178.1 CsbD family protein -
  I6I32_RS08490 (I6I32_08490) - 1760305..1761750 (-) 1446 WP_198464508.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  I6I32_RS08495 (I6I32_08495) - 1761856..1763478 (+) 1623 WP_198464509.1 polysaccharide biosynthesis protein -
  I6I32_RS08500 (I6I32_08500) amiA 1763681..1765639 (+) 1959 WP_198464510.1 peptide ABC transporter substrate-binding protein Regulator
  I6I32_RS08505 (I6I32_08505) - 1765785..1766879 (+) 1095 WP_198464511.1 cystathionine gamma-synthase -
  I6I32_RS08510 (I6I32_08510) - 1766887..1768053 (+) 1167 WP_198464512.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72881.96 Da        Isoelectric Point: 4.7326

>NTDB_id=516683 I6I32_RS08500 WP_198464510.1 1763681..1765639(+) (amiA) [Streptococcus oralis strain FDAARGOS_1075]
MKKSKAKYLTLASVVLSAGILLSACGNSNSATKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYSGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKTS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEEGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDYDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPGLRKTVPFSAPFSQAGNKGVESYKYLKLQDKTVTTDEYEKAKEKWQKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=516683 I6I32_RS08500 WP_198464510.1 1763681..1765639(+) (amiA) [Streptococcus oralis strain FDAARGOS_1075]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
TTCAAATAGCGCTACTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTGACCAATTTGGTGGATGGGTTGATGGAAAATGACCAATACGGTAACTATGTTCCATCATTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATACGCTCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCGGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACGGTTCAGTACACTTTGACACGTCCAGAATCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGATTTCTTAAAATCAAAAGGGGATGACTTTGGTAAGGTAGATCCTTCTAGCATTTTGTACA
GTGGACCTTTCTTGATGAAATCTTTTGTTTCAAAATCTGTTATCGAATACAAGAAAAATCCAAATTACTGGGATGCTAAA
AATGTCTTTGTGGACGATGTGAAATTGACTTACTATGACGGTAGTGACCAAGATGCCCTAGCTCGTAACTTCGTAGAAGG
AGTATACAGCTACGCGCGTCTCTACCCAAATAGCTCAAGCTTTGAAGGAATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAACGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACGTCTAAAACATCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAAGAAGGAGCAACAAAGATTATTCGTAACTTGGTTGTACCTCCTACGTTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCGCAAGATCCATACTACAATCCTGACAAGGCCAAGGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTACAATTCCCAATCCACTTGGACGTATCAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGTTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAATTATCAACAGATGACTACGATAAT
TCTAGCTACCTCGCTCAAACCGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGCGCTGACTACTTGGATCC
ATCAAGCTATCTAGATATCCTAAATGTCAATAACGGTGGTATGTTGCAAAACCTTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTGGAAGAAGCTAATAAAGAGCAAGATCCAGCAAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTCAGGGTGGAACACC
TGGCTTGAGAAAGACAGTTCCATTCTCAGCGCCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAATACCTCA
AGTTGCAAGATAAGACTGTAACGACTGATGAGTATGAAAAAGCTAAAGAAAAATGGCAGAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.927

100

0.564
  amiA3 Streptococcus thermophilus LMG 18311

55.69

100

0.563
  amiA3 Streptococcus thermophilus LMD-9

55.387

100

0.56