Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   KW2_RS05955 Genome accession   NC_022369
Coordinates   1245948..1247018 (-) Length   356 a.a.
NCBI ID   WP_011835149.1    Uniprot ID   A2RKP9
Organism   Lactococcus cremoris subsp. cremoris KW2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1240948..1252018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW2_RS05940 (kw2_1192) dprA 1241245..1242093 (+) 849 WP_021037268.1 DNA-processing protein DprA Machinery gene
  KW2_RS05945 (kw2_1193) topA 1242359..1244479 (+) 2121 WP_021037269.1 type I DNA topoisomerase -
  KW2_RS05950 (kw2_1194) trmFO 1244551..1245897 (+) 1347 WP_021037270.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  KW2_RS05955 (kw2_1195) xerS 1245948..1247018 (-) 1071 WP_011835149.1 tyrosine recombinase XerS Machinery gene
  KW2_RS05960 (kw2_1196) - 1247640..1248347 (-) 708 WP_021037271.1 hypothetical protein -
  KW2_RS05965 (kw2_1197) - 1248724..1250673 (-) 1950 WP_021037272.1 cation:proton antiporter -
  KW2_RS11780 (kw2_1198) - 1250917..1251810 (+) 894 WP_021037273.1 DUF6287 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41307.08 Da        Isoelectric Point: 9.6026

>NTDB_id=51664 KW2_RS05955 WP_011835149.1 1245948..1247018(-) (xerS) [Lactococcus cremoris subsp. cremoris KW2]
MKREQLIQNIEKLKHVMPPYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTHSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDSEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLNTMIVEVTRKGGKRDA
VPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDIASRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=51664 KW2_RS05955 WP_011835149.1 1245948..1247018(-) (xerS) [Lactococcus cremoris subsp. cremoris KW2]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAGCATGTTATGCCTCCTTATGTTCTTGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTAAATACACTTTATGAATATTTAAAAGAATATGAACGCTTTTTTAGCTGGTTGGTGG
ACTCGGGGGTTGCTGATGTTGATAAAATAACTGACGTTTCACTCTCTGTTCTGGAAAACTTAACTAAACGAGATTTGGAG
TCGTTTATTCTCTATCTTAGGGAAAGGCCACGCTTAAATACCCATTCTACACGCTATGGGGTTAGCCAAACGACGATTAA
TCGTACTTTATCAGCTCTTTCTAGTCTTTATAAATACCTTACTGAGGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAAAAAGTACAAACGAAGAAAAAATCTGAAACTTTAGCTTCTCGTGCTGAAAATATCAAAGGAAAA
TTATTTTTAGGAGATGAAACTCAGGGTTTCCTTGATTATATTGATAGTGAATATGAGAAAACATTATCAAATCGAGCCCG
CTCTAGTTTTTTCAAAAATAAAGAACGGGATTTAGCAATTATTGCCCTTATTTTAGCTTCTGGTATTCGTTTATCTGAGG
CAGTTAATGTTGATTTAAGAGATTTAAATCTTAACACTATGATTGTTGAAGTTACTCGTAAGGGAGGTAAAAGGGATGCT
GTTCCTTTTGCTCCTTTTGCCAAAACTTATTTTGAGCGCTATTTAGAGGTGCGCAGTCAACGTTATAAAACAACTGCCAA
AGATACTGCATTTTTTGTCACTCTTTATCGTGATATAGCCAGTCGAATCGATCCGTCTAGTGTTGAAAAGTTAGTCGCTA
AATATTCACAAGCTTTTAAAGTTAGGGTAACACCTCACAAACTAAGACATACTCTTGCAACTCGGCTTTACGCTCAGACA
AATTCTCAGGTGTTGGTGAGTAATCAGCTAGGTCATGCTTCAACTCAGGTAACCGACCTCTATACGCATATCATTAATGA
GGAGCAAAAAAATGCCTTAGATAGTCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RKP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.124

100

0.761

Multiple sequence alignment