Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   I6I32_RS03685 Genome accession   NZ_CP066041
Coordinates   769651..771633 (-) Length   660 a.a.
NCBI ID   WP_049477778.1    Uniprot ID   A0A1X1HH26
Organism   Streptococcus oralis strain FDAARGOS_1075     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 764651..776633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I32_RS03685 (I6I32_03685) amiA3 769651..771633 (-) 1983 WP_049477778.1 peptide ABC transporter substrate-binding protein Regulator
  I6I32_RS03690 (I6I32_03690) rfbD 771871..772725 (+) 855 WP_198464954.1 dTDP-4-dehydrorhamnose reductase -
  I6I32_RS03695 (I6I32_03695) rfbB 772786..773832 (-) 1047 WP_198464955.1 dTDP-glucose 4,6-dehydratase -
  I6I32_RS03700 (I6I32_03700) - 773851..774444 (-) 594 WP_000131469.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  I6I32_RS03705 (I6I32_03705) rfbA 774445..775314 (-) 870 WP_000676122.1 glucose-1-phosphate thymidylyltransferase RfbA -
  I6I32_RS03710 (I6I32_03710) - 775386..776438 (-) 1053 WP_198464956.1 galactofuranosyltransferase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73335.60 Da        Isoelectric Point: 4.5642

>NTDB_id=516634 I6I32_RS03685 WP_049477778.1 769651..771633(-) (amiA3) [Streptococcus oralis strain FDAARGOS_1075]
MKSSKLLALAGVTLLAAATLAACSGSSSNAKGEKTFSYIYETDPDNLNYLTTGKAATANITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHLDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYSETEKTFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKASTKKALLNKDFRQAIAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSNV
NLDDAQDGLYNPDKAKAEFAKAKAALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVIDIQQLQKDDV
QNITYFAETAAGEDWDISDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLEVQDKAVTTDEYQKAQEKW
LKEKEESNKKAQEELANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=516634 I6I32_RS03685 WP_049477778.1 769651..771633(-) (amiA3) [Streptococcus oralis strain FDAARGOS_1075]
ATGAAAAGTTCAAAACTACTTGCCCTTGCGGGTGTGACGTTATTGGCAGCTGCGACTCTTGCGGCCTGCTCTGGATCAAG
TTCAAATGCTAAAGGTGAGAAAACATTCTCATACATTTACGAAACGGATCCTGATAACCTAAACTATTTGACAACTGGTA
AGGCAGCTACAGCAAATATTACTAGTAACGTTATCGATGGCTTACTTGAAAATGACCGCTATGGGAACTTTGTACCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGATGGATTGACTTACACGTATACACTCCGAAAGGATGCAAAATGGTATACATC
TGAAGGTGAGGAGTATGCAGAAGTTAAAGCTCAAGACTTTGTAACTGGTCTTAAGTATGCTGCTGATAAGAAATCAGATG
GTCTTTACCTGGTTCAGGAATCTATCAAGGGATTGGATGCCTATGTCAAAGGAGAAATTACAGATTTTTCTCAAGTAGGA
ATCAAAGCTCTTGATGATTATACCGTTCAATACACATTGAACAAGCCAGAAAGTTTCTGGAATTCTAAGACAACAATGGG
TGTTCTGGCTCCTGTTAATGAAGAATTTTTGAACTCTAAAGGGGATGACTTTGCTAAAGGTACGGACCCAAGCAGCATTC
TCTATAATGGACCATTCTTACTCAAATCAATCGTAGCCAAATCATCAGTCGAGTTCGAAAAGAATCCAAACTATTGGGAC
AAAGACAATGTTCATCTTGATAAAGTGAAATTATCCTTCTGGGATGGTCAAGATACTAATAAGCCAACTGAAGCTTTCAA
AGACGGTAGCTTTACAATGGCTCGCCTCTTCCCAACAAGTGCTAGTTACTCAGAGACTGAAAAAACATTCAAAGACAATA
TCGTTTATACCCAACAAGATTCTACTACTTATTTAGTAGGCACAAATATCGATCGCCAGTCTTATAAGTACACTTCTAAG
ACAACAGATGAGGAAAAAGCATCAACCAAGAAGGCACTTTTGAATAAGGACTTCCGTCAAGCTATTGCATTTGGTTTTGA
CAGAACAGCCTACGCTTCTCAAGTAAATGGTGCAAGCGGGGCTACTAAACTGCTTCGTAACTTATTTGTTCCCCCTACAT
TTGTACAGGCAGATGGGAAAAACTTTGGGGAATTAGTTAAGGAGAAATTGGTGACCTATGGAGACGAGTGGAGCAACGTA
AACTTGGATGATGCTCAAGATGGACTCTACAATCCTGACAAAGCCAAAGCAGAGTTCGCTAAAGCTAAGGCGGCCCTTCA
AGCGGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGATCAAACAAATACAACAAAAGTTCAACGTGTTCAAT
CTTTTAAACAGTCAGTTGAAGAAAATCTAGGATCAGATAATGTGGTTATCGACATCCAACAGCTCCAAAAAGATGATGTT
CAAAACATTACCTACTTCGCTGAAACTGCGGCTGGAGAAGACTGGGATATCTCAGATAACGTGGGTTGGTCTCCAGACTA
TATCGATCCATCTACTTATCTTGATATTATCAAGCCTTCTGTAGGAGAAAACACGAAAACATATCTAGGATTTGATTCTG
GGACAAACAACGCTGCGGCTAAGCAAGTTGGTTTAGAAGATTACGAAAAAATGGTTGTGGAAGCTGGTGAAGAAACCACT
GATGTTTCAAAACGTTATGAGAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATTCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCATTTGCATACTCTGGTAACAAGGGTATGAGTG
AAGCCCTTTTGTACAAATATCTAGAAGTACAAGATAAAGCCGTGACAACAGACGAATACCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCCCAAGAAGAACTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1HH26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.212

100

0.603
  amiA Streptococcus salivarius strain HSISS4

59.758

100

0.598
  amiA3 Streptococcus thermophilus LMG 18311

59.607

100

0.597