Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H55_RS05895 Genome accession   NZ_CP066024
Coordinates   1171115..1171639 (+) Length   174 a.a.
NCBI ID   WP_005226365.1    Uniprot ID   A0A505IXH5
Organism   Enterococcus casseliflavus strain FDAARGOS_998     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1166115..1176639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H55_RS05885 (I6H55_05885) gyrA 1167983..1170508 (+) 2526 WP_010748472.1 DNA gyrase subunit A -
  I6H55_RS05890 (I6H55_05890) rpsF 1170772..1171071 (+) 300 WP_005226363.1 30S ribosomal protein S6 -
  I6H55_RS05895 (I6H55_05895) ssb 1171115..1171639 (+) 525 WP_005226365.1 single-stranded DNA-binding protein Machinery gene
  I6H55_RS05900 (I6H55_05900) rpsR 1171663..1171899 (+) 237 WP_005226367.1 30S ribosomal protein S18 -
  I6H55_RS05905 (I6H55_05905) - 1172140..1173588 (+) 1449 WP_010748473.1 DHH family phosphoesterase -
  I6H55_RS05910 (I6H55_05910) rplI 1173604..1174056 (+) 453 WP_005226371.1 50S ribosomal protein L9 -
  I6H55_RS05915 (I6H55_05915) dnaB 1174165..1175535 (+) 1371 WP_005226374.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19149.65 Da        Isoelectric Point: 4.7093

>NTDB_id=516525 I6H55_RS05895 WP_005226365.1 1171115..1171639(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_998]
MINNVVLVGRLTKDPDLRYTSNGTGVATFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTDSGSGSNNTYNSNSSSGFGNNNSNQTQSSQPSGMPNFDRDNSDPF
GNSSIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=516525 I6H55_RS05895 WP_005226365.1 1171115..1171639(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_998]
TTGATTAATAATGTTGTACTAGTAGGAAGACTAACCAAAGATCCTGATTTACGTTACACTTCTAATGGCACTGGTGTCGC
AACCTTTACCTTGGCGGTAAACCGCAATTTTACCAACCAAAGTGGAGAGCGCGAAGCTGATTTCATCAACTGTGTTATTT
GGAGAAAACCAGCGGAAACATTAGCAAACTATGCACGCAAAGGAACTTTATTAGGGGTTACTGGACGTATTCAAACCCGT
TCATACGACAACCAACAAGGCCAACGTGTTTATGTAACAGAAGTCGTTGCTGACAACTTCCAATTATTAGAGTCGCGGAA
TGCTTCCGAGCAAAGACGCACAACTGATAGCGGATCTGGCAGTAACAATACGTATAACTCAAACAGTTCTTCTGGATTTG
GTAACAATAACTCAAATCAAACTCAATCCTCTCAACCATCAGGAATGCCTAATTTTGATCGAGACAACTCCGATCCATTC
GGAAACTCATCAATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A505IXH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.795

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.866

100

0.575
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385