Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   I6H77_RS05820 Genome accession   NZ_CP066021
Coordinates   1224428..1225477 (+) Length   349 a.a.
NCBI ID   WP_000653781.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1219428..1230477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS05795 (I6H77_05795) dnaJ 1220997..1222133 (+) 1137 WP_001066317.1 molecular chaperone DnaJ -
  I6H77_RS05800 (I6H77_05800) - 1222211..1222870 (-) 660 WP_000782734.1 hypothetical protein -
  I6H77_RS05805 (I6H77_05805) - 1222934..1223212 (-) 279 WP_000777741.1 hypothetical protein -
  I6H77_RS05810 (I6H77_05810) - 1223222..1223632 (-) 411 WP_001278311.1 HIT family protein -
  I6H77_RS05815 (I6H77_05815) pptA 1223700..1224431 (+) 732 WP_000889938.1 ABC transporter ATP-binding protein Regulator
  I6H77_RS05820 (I6H77_05820) pptB 1224428..1225477 (+) 1050 WP_000653781.1 ABC transporter permease Regulator
  I6H77_RS05825 (I6H77_05825) ccrZ 1225525..1226319 (+) 795 WP_000363020.1 cell cycle regulator CcrZ -
  I6H77_RS05830 (I6H77_05830) trmB 1226316..1226951 (+) 636 WP_001266088.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  I6H77_RS05835 (I6H77_05835) rimP 1227078..1227557 (+) 480 WP_000338695.1 ribosome maturation factor RimP -
  I6H77_RS05840 (I6H77_05840) nusA 1227600..1228736 (+) 1137 WP_000032277.1 transcription termination factor NusA -
  I6H77_RS05845 (I6H77_05845) rnpM 1228758..1229051 (+) 294 WP_000857560.1 RNase P modulator RnpM -
  I6H77_RS05850 (I6H77_05850) - 1229044..1229343 (+) 300 WP_001041395.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40180.08 Da        Isoelectric Point: 9.7712

>NTDB_id=516486 I6H77_RS05820 WP_000653781.1 1224428..1225477(+) (pptB) [Streptococcus oralis strain FDAARGOS_1020]
MKDLFLKRKQAFRKECVGYLRYVLNDHFVLFLLILIGFLAYQYSQLLQDFPENHWPILLFLGIVSALLLAWGGIATYMEG
PDKLFLLVSEEEVKSYLKGQTVSSLVFWTIVQTLFLLLFAPLFLAMGYGLPVFLVYVLLLGAGKYLLFRQKASKFFTETG
LDWDYVIAQESKRKQVLLRFFALFTQVKGVSNSVKRRAYLDFILKAVQKVPSKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLALLFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLEKGEKEKGLKQIVVGVGSAVLLLELLVGAVVFQE
KIALLALVGASLFLQLFYLPYQLKRLVDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=516486 I6H77_RS05820 WP_000653781.1 1224428..1225477(+) (pptB) [Streptococcus oralis strain FDAARGOS_1020]
ATGAAAGACTTGTTCTTAAAGCGAAAGCAGGCTTTTCGTAAGGAGTGTGTCGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCTTGCTGATTCTCATCGGTTTTCTAGCTTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAATC
ACTGGCCTATCCTCTTGTTTTTGGGGATTGTATCTGCCTTGCTTTTGGCTTGGGGAGGAATCGCGACCTACATGGAAGGA
CCGGACAAACTCTTTCTCTTAGTCAGTGAAGAAGAGGTAAAGTCCTACCTCAAAGGACAGACGGTGAGTTCACTGGTTTT
CTGGACAATTGTTCAAACCCTCTTTTTACTCTTGTTTGCACCCTTGTTTTTAGCCATGGGCTATGGCTTGCCAGTCTTTC
TCGTCTATGTGCTTTTATTAGGAGCTGGGAAATACCTCCTTTTTCGCCAAAAAGCCAGCAAATTTTTCACTGAAACTGGG
CTGGATTGGGATTATGTCATTGCCCAAGAAAGCAAGCGCAAGCAAGTTTTGCTTCGTTTCTTTGCTCTCTTTACTCAGGT
CAAGGGCGTTTCAAATAGTGTCAAACGTCGCGCTTATCTGGATTTCATCCTTAAAGCAGTTCAGAAAGTGCCGAGCAAGA
TTTGGCAAAACCTCTATCTCCGTTCTTACTTGCGAAATGGAGACCTCTTTGCCCTCAGTTTGCGTCTTTTGCTCCTATCC
TTGTTAGCTTTGCTCTTTATCGAGCAATCTTGGATTGCGACAGCAGTGGTGGTTCTATTTAACTACCTCTTGCTCTTTCA
GTTACTGGCCCTCTATCATGCCTTTGACTACCAATACTTGACCCAGCTCTTTCCACTAGAAAAAGGGGAGAAGGAGAAAG
GGTTGAAACAGATTGTAGTCGGTGTGGGAAGTGCAGTTCTTTTGTTAGAATTACTGGTCGGAGCAGTGGTTTTTCAAGAG
AAAATAGCCTTGTTGGCTCTTGTAGGGGCTAGTCTCTTCCTACAATTGTTTTATTTGCCTTACCAACTAAAAAGATTGGT
TGACGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

48

100

0.481

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467