Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   I6H77_RS02705 Genome accession   NZ_CP066021
Coordinates   566867..568849 (-) Length   660 a.a.
NCBI ID   WP_000842595.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1020     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 561867..573849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H77_RS02705 (I6H77_02705) amiA3 566867..568849 (-) 1983 WP_000842595.1 peptide ABC transporter substrate-binding protein Regulator
  I6H77_RS02710 (I6H77_02710) rfbD 569087..569941 (+) 855 WP_000600923.1 dTDP-4-dehydrorhamnose reductase -
  I6H77_RS02715 (I6H77_02715) rfbB 570002..571048 (-) 1047 WP_000141517.1 dTDP-glucose 4,6-dehydratase -
  I6H77_RS02720 (I6H77_02720) - 571041..571589 (-) 549 WP_000657668.1 hypothetical protein -
  I6H77_RS02725 (I6H77_02725) - 571593..572186 (-) 594 WP_000131473.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  I6H77_RS02730 (I6H77_02730) rfbA 572187..573056 (-) 870 WP_000676127.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73376.70 Da        Isoelectric Point: 4.5885

>NTDB_id=516442 I6H77_RS02705 WP_000842595.1 566867..568849(-) (amiA3) [Streptococcus oralis strain FDAARGOS_1020]
MKSSKLLALAGVTLLAAATLAACSGSSSNAKGEKTFSYIYETDPDNLNYLTTGKAATANITSNVIDGLLENDRYGNFVPS
MAENWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHLDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYSETEKTFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKVSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSNV
NLDDAQDGLYNPDKAKAEFAKAKAALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVIDIQQLQKDDV
QNITYFAETAAGEDWDISDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLEVQDKAVTTEEYQKAQEKW
LKEKEESNKKAQEELANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=516442 I6H77_RS02705 WP_000842595.1 566867..568849(-) (amiA3) [Streptococcus oralis strain FDAARGOS_1020]
ATGAAAAGTTCAAAACTACTTGCCCTTGCGGGTGTGACGTTATTGGCAGCTGCGACTCTGGCTGCGTGCTCTGGATCAAG
TTCAAATGCTAAAGGTGAGAAAACATTCTCATACATTTACGAAACGGATCCTGATAACCTAAACTATTTGACAACTGGTA
AGGCAGCTACAGCAAATATTACGAGCAACGTTATCGATGGTTTGCTTGAAAATGACCGCTACGGTAACTTTGTACCATCT
ATGGCTGAGAATTGGTCTGTATCTAAGGATGGATTGACTTACACGTATACACTCCGAAAGGATGCAAAATGGTATACATC
TGAAGGTGAGGAGTATGCAGAAGTTAAAGCTCAAGACTTTGTAACTGGTCTTAAGTATGCTGCTGATAAGAAATCAGATG
GTCTTTACCTGGTTCAGGAATCTATCAAGGGATTGGATGCTTACGTCAAAGGAGAAATTACAGATTTTTCTCAAGTAGGA
ATCAAAGCTCTTGATGATTATACCGTTCAATACACATTGAACAAGCCAGAAAGTTTCTGGAATTCTAAGACAACAATGGG
TGTTCTGGCTCCTGTTAATGAAGAATTTTTGAACTCTAAAGGGGATGACTTTGCTAAAGGTACGGACCCAAGCAGCATTC
TCTATAATGGACCATTCTTACTCAAATCAATCGTAGCCAAATCATCAGTCGAGTTCGAAAAGAATCCAAACTATTGGGAC
AAAGACAATGTCCATCTTGATAAAGTGAAATTATCCTTCTGGGATGGTCAAGATACTAATAAGCCAACTGAAGCTTTCAA
AGACGGTAGCTTTACAATGGCTCGCCTCTTCCCAACAAGTGCTAGTTACTCAGAGACTGAAAAAACATTCAAAGACAATA
TCGTTTATACCCAACAAGATTCTACTACTTATTTAGTAGGCACAAATATCGATCGCCAGTCTTATAAGTACACTTCTAAG
ACAACAGATGAGGAAAAAGTATCAACCAAGAAGGCACTTTTGAATAAGGACTTCCGTCAAGCTATTGCATTTGGTTTTGA
CAGAACAGCCTACGCTTCTCAAGTAAATGGTGCAAGCGGGGCTACTAAACTGCTTCGTAACTTATTTGTTCCTCCTACAT
TTGTACAGGCAGATGGGAAAAACTTTGGGGAATTAGTTAAGGAAAAATTGGTGACCTATGGAGATGAGTGGAGCAACGTA
AACTTGGATGATGCCCAAGATGGACTCTACAATCCTGACAAAGCCAAAGCAGAGTTCGCTAAAGCTAAGGCGGCCCTTCA
AGCGGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGATCAAACCAATACAACAAAAGTTCAACGTGTTCAAT
CTTTTAAACAGTCAGTTGAAGAAAATCTAGGATCAGATAATGTGGTTATCGACATCCAACAGCTCCAAAAAGATGATGTT
CAAAACATTACCTACTTCGCTGAAACTGCGGCTGGAGAAGACTGGGATATCTCAGATAACGTGGGTTGGTCTCCAGACTA
TATCGATCCATCTACTTATCTTGATATTATCAAGCCTTCTGTAGGAGAAAATACGAAAACATATCTAGGATTTGATTCTG
GGACAAACAACGCTGCGGCTAAGCAAGTTGGTTTAGAAGATTACGAAAAAATGGTTGTGGAAGCTGGTGAAGAAACCACT
GATGTTTCAAAACGTTATGAGAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATTCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCATTTGCATACTCTGGTAACAAGGGTATGAGTG
AAGCCCTTTTGTACAAATATCTAGAAGTACAAGATAAGGCAGTGACAACAGAAGAATACCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCCCAAGAAGAACTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

60.061

100

0.602
  amiA Streptococcus salivarius strain HSISS4

59.607

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.455

100

0.595