Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H76_RS07500 Genome accession   NZ_CP065994
Coordinates   1456763..1457269 (+) Length   168 a.a.
NCBI ID   WP_006531978.1    Uniprot ID   A0A380KS38
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1451763..1462269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS10185 - 1453800..1454069 (+) 270 WP_398577246.1 DNA repair protein -
  I6H76_RS07475 (I6H76_07475) lepB 1454056..1454640 (+) 585 WP_006531973.1 signal peptidase I -
  I6H76_RS07480 (I6H76_07480) - 1454699..1455592 (+) 894 WP_006531974.1 hypothetical protein -
  I6H76_RS07485 (I6H76_07485) - 1455598..1455918 (+) 321 WP_006531975.1 hypothetical protein -
  I6H76_RS07490 (I6H76_07490) - 1456109..1456255 (+) 147 WP_223903580.1 ATP-dependent protease -
  I6H76_RS07495 (I6H76_07495) rpsF 1456461..1456751 (+) 291 WP_006531977.1 30S ribosomal protein S6 -
  I6H76_RS07500 (I6H76_07500) ssb 1456763..1457269 (+) 507 WP_006531978.1 single-stranded DNA-binding protein Machinery gene
  I6H76_RS07505 (I6H76_07505) rpsR 1457330..1457569 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  I6H76_RS07510 (I6H76_07510) - 1457716..1458240 (+) 525 WP_006531979.1 heme biosynthesis HemY N-terminal domain-containing protein -
  I6H76_RS07515 (I6H76_07515) - 1458242..1458466 (+) 225 WP_043878352.1 helix-turn-helix transcriptional regulator -
  I6H76_RS07520 (I6H76_07520) - 1458450..1458596 (+) 147 WP_006531981.1 hypothetical protein -
  I6H76_RS07525 (I6H76_07525) - 1458678..1458899 (+) 222 WP_014335256.1 hypothetical protein -
  I6H76_RS07530 (I6H76_07530) - 1458940..1459596 (-) 657 WP_006531984.1 DUF1129 domain-containing protein -
  I6H76_RS07535 (I6H76_07535) - 1460032..1460976 (-) 945 WP_006531985.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18627.24 Da        Isoelectric Point: 4.7187

>NTDB_id=516147 I6H76_RS07500 WP_006531978.1 1456763..1457269(+) (ssb) [Streptococcus infantarius strain FDAARGOS_1019]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLVGVTGRIQTR
NYENQQGQRVYITEVVADNFQILESRATREGQSSGSYNGGFNNNSSLDGSSNGGFSSQSSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=516147 I6H76_RS07500 WP_006531978.1 1456763..1457269(+) (ssb) [Streptococcus infantarius strain FDAARGOS_1019]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGTACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACATAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAGTGGTTCTTACAACGGTGGATTTAACAACAATTCATCATTGGATGGATCTTCTAATGGTG
GTTTCTCATCACAATCTTCACAACAAACACCTAACTTCGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAT
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380KS38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.85

100

0.637
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.286

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

63.095

0.363