Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   I6H57_RS01655 Genome accession   NZ_CP065991
Coordinates   344526..345194 (+) Length   222 a.a.
NCBI ID   WP_005695555.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain FDAARGOS_1000     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 339526..350194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H57_RS01620 (I6H57_01620) rpmG 340377..340547 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  I6H57_RS01625 (I6H57_01625) rpmB 340559..340795 (-) 237 WP_005599762.1 50S ribosomal protein L28 -
  I6H57_RS01630 (I6H57_01630) radC 341014..341679 (-) 666 WP_005695550.1 DNA repair protein RadC -
  I6H57_RS01635 (I6H57_01635) coaBC 341881..343083 (+) 1203 WP_005695551.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  I6H57_RS01640 (I6H57_01640) dut 343157..343612 (+) 456 WP_005695552.1 dUTP diphosphatase -
  I6H57_RS01645 (I6H57_01645) slmA 343616..344269 (+) 654 WP_005695553.1 nucleoid occlusion factor SlmA -
  I6H57_RS01650 (I6H57_01650) - 344291..344509 (+) 219 WP_005695554.1 YheU family protein -
  I6H57_RS01655 (I6H57_01655) crp 344526..345194 (+) 669 WP_005695555.1 cAMP-activated global transcriptional regulator CRP Regulator
  I6H57_RS01660 (I6H57_01660) nagE 345702..347168 (-) 1467 WP_005695556.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  I6H57_RS01665 (I6H57_01665) - 347386..348075 (+) 690 WP_005698367.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  I6H57_RS01670 (I6H57_01670) - 348087..349025 (+) 939 WP_005695558.1 N-acetylmannosamine kinase -
  I6H57_RS01675 (I6H57_01675) - 349018..349884 (+) 867 WP_005695559.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25131.91 Da        Isoelectric Point: 6.6936

>NTDB_id=516022 I6H57_RS01655 WP_005695555.1 344526..345194(+) (crp) [Haemophilus parainfluenzae strain FDAARGOS_1000]
MSEDVELLEEQKPQDDDQQRDPALDWFLTHCHLHKYPAKSTLIHAGEDANILYFLIKGTVMVSSKDDEGKEMILSYLGAG
QFFGEAGLFDEGSKRSAWVKTKTPCEIAEISYKKYRQLIQINPEILMFLTAQLSKRLQNTSRQVTNLAFLDVAGRIAQAL
MHLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGTR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=516022 I6H57_RS01655 WP_005695555.1 344526..345194(+) (crp) [Haemophilus parainfluenzae strain FDAARGOS_1000]
ATGTCAGAAGATGTAGAATTACTAGAAGAACAAAAGCCGCAGGACGATGATCAGCAGCGCGATCCTGCTCTGGATTGGTT
CCTTACTCACTGTCATTTACATAAATATCCAGCAAAATCGACCTTAATTCATGCGGGTGAAGATGCCAATATTTTATATT
TCTTAATTAAAGGAACCGTGATGGTTTCATCGAAAGATGATGAAGGCAAAGAGATGATTTTATCTTATTTAGGTGCCGGA
CAATTTTTTGGTGAAGCGGGTTTATTTGATGAAGGCTCGAAACGTTCTGCTTGGGTGAAAACGAAAACGCCTTGTGAAAT
TGCGGAAATTTCCTATAAAAAATATCGTCAGCTGATTCAAATTAATCCTGAAATTTTAATGTTCCTTACTGCTCAGTTAT
CAAAACGCTTGCAAAATACATCGCGACAAGTGACTAACTTGGCCTTTTTAGATGTGGCAGGACGTATTGCTCAGGCGCTT
ATGCATTTAGCAAAACAACCTGAAGCGATGACGCATCCTGATGGTATGCAGATTAAAATTACACGTCAGGAAATCGGTCA
AATGGTAGGGTGCTCGCGTGAAACCGTAGGGCGAATCATTAAGATGCTGGAAGATCAAAATTTAATCCATGCGCACGGCA
AAACCATTGTGGTTTACGGCACTCGATAG

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(34-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(154-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

86.607

100

0.874
  crp Vibrio cholerae strain A1552

73.529

91.892

0.676
  crp Acinetobacter baumannii D1279779

46.734

89.64

0.419