Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JCQ35_RS10125 Genome accession   NZ_CP065960
Coordinates   1963979..1965349 (-) Length   456 a.a.
NCBI ID   WP_025904845.1    Uniprot ID   A0A2T4RU06
Organism   Mammaliicoccus sciuri strain GDK8D55P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958979..1970349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCQ35_RS10100 (JCQ35_10100) cysE 1959373..1960014 (-) 642 WP_025904850.1 serine O-acetyltransferase -
  JCQ35_RS10105 (JCQ35_10105) gltX 1960268..1961722 (-) 1455 WP_025904849.1 glutamate--tRNA ligase -
  JCQ35_RS10110 (JCQ35_10110) ispF 1961738..1962217 (-) 480 WP_025904848.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JCQ35_RS10115 (JCQ35_10115) ispD 1962210..1962896 (-) 687 WP_198471735.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JCQ35_RS10120 (JCQ35_10120) - 1962898..1963956 (-) 1059 WP_119475218.1 PIN/TRAM domain-containing protein -
  JCQ35_RS10125 (JCQ35_10125) radA 1963979..1965349 (-) 1371 WP_025904845.1 DNA repair protein RadA Machinery gene
  JCQ35_RS10130 (JCQ35_10130) - 1965505..1967967 (-) 2463 WP_025904844.1 ATP-dependent Clp protease ATP-binding subunit -
  JCQ35_RS10135 (JCQ35_10135) - 1967984..1968991 (-) 1008 WP_107633844.1 protein arginine kinase -
  JCQ35_RS10140 (JCQ35_10140) - 1968992..1969528 (-) 537 WP_025904842.1 UvrB/UvrC motif-containing protein -
  JCQ35_RS10145 (JCQ35_10145) - 1969543..1970004 (-) 462 WP_025904841.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50477.24 Da        Isoelectric Point: 7.7103

>NTDB_id=515743 JCQ35_RS10125 WP_025904845.1 1963979..1965349(-) (radA) [Mammaliicoccus sciuri strain GDK8D55P]
MAKKKVIFECLACGYQSPKWMGKCPNCGAWNQMEESIEHKETKGPKNTFKSDVPAQKIEKLKDVKEEDTPRIKTKINEFN
RVLGGGVVEGSLVLIGGDPGIGKSTLLLQICAALSQQKNVLYVSGEESVRQTKLRAERLVEDSGELNVYAETNLEIIHSM
VQKEKPDVLVIDSIQTVFHPEVTSAPGSVSQVRECTQNLMHIAKQMNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFEG
DTHHAYRILRAVKNRFGSTNEMGIFEMKQTGLNEVKNPSEMFLEERTKHVSGSTIVATMEGTRPILVEVQALVTPTTFHN
PRRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKIAGGVKLSEPAVDLSIVIAIASSFQDKPTKGDDCFVGEVGLTGE
VRRVARIDQRVQEAAKLGFKRIIIPKNNIKGLEFPEGTEVIGVSTTREALKIAFNA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=515743 JCQ35_RS10125 WP_025904845.1 1963979..1965349(-) (radA) [Mammaliicoccus sciuri strain GDK8D55P]
ATGGCCAAAAAGAAAGTAATATTTGAGTGTTTAGCCTGCGGATATCAATCTCCAAAATGGATGGGGAAATGCCCTAATTG
TGGTGCATGGAACCAAATGGAAGAATCAATAGAACATAAAGAAACTAAAGGTCCTAAAAATACATTCAAGTCAGATGTAC
CCGCACAAAAAATAGAAAAATTAAAAGACGTTAAAGAAGAAGATACACCTAGAATTAAGACAAAAATCAATGAATTTAAT
CGCGTATTAGGTGGCGGTGTTGTAGAAGGTTCGCTTGTACTCATTGGTGGTGACCCTGGTATTGGTAAATCCACATTATT
ATTACAAATTTGTGCGGCTTTATCTCAACAAAAAAATGTCTTATATGTTTCAGGTGAAGAATCTGTAAGACAAACAAAAT
TAAGAGCTGAAAGATTAGTTGAAGATTCAGGAGAATTAAATGTTTATGCTGAAACGAATTTAGAGATTATACATAGTATG
GTTCAAAAAGAAAAACCAGATGTATTAGTAATAGATTCCATTCAAACTGTCTTCCACCCTGAAGTCACTTCTGCGCCAGG
TTCTGTTTCTCAAGTTAGAGAATGTACACAAAATTTAATGCACATCGCAAAACAAATGAACATTGCTACATTTATTGTTG
GACACGTAACGAAAGATGGACAAATTGCTGGTCCACGTTTGTTAGAACATATGGTAGATACAGTATTATATTTTGAAGGC
GATACACATCATGCATACAGAATATTAAGAGCAGTCAAAAACCGTTTTGGTTCAACAAATGAAATGGGTATTTTTGAAAT
GAAGCAAACGGGTCTTAACGAAGTTAAAAATCCGTCTGAAATGTTCTTAGAAGAAAGAACGAAACATGTATCGGGTTCGA
CTATTGTGGCAACTATGGAAGGTACGAGACCTATTTTAGTTGAAGTACAAGCTTTAGTGACGCCAACGACTTTTCATAAT
CCACGAAGAATGGCAACAGGTATTGATCACAATAGATTAAGCTTATTGATGGCTGTATTAGAGAAGAAAGAGAATTTCTT
ATTACAACAACAAGACGCATATATCAAAATTGCTGGTGGTGTAAAATTAAGTGAACCCGCAGTAGATTTAAGTATTGTTA
TCGCAATAGCTTCAAGTTTCCAAGATAAACCTACTAAAGGTGATGATTGTTTCGTAGGAGAGGTTGGCTTAACAGGTGAA
GTAAGAAGGGTTGCTAGAATTGATCAACGTGTACAAGAAGCGGCTAAATTAGGATTTAAACGTATTATCATACCTAAAAA
TAATATTAAAGGTTTAGAATTCCCTGAAGGTACAGAAGTTATTGGCGTATCAACAACAAGAGAAGCATTGAAAATTGCTT
TTAATGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4RU06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.721

100

0.66
  radA Streptococcus pneumoniae Rx1

61.894

99.561

0.616
  radA Streptococcus pneumoniae D39

61.894

99.561

0.616
  radA Streptococcus pneumoniae R6

61.894

99.561

0.616
  radA Streptococcus pneumoniae TIGR4

61.894

99.561

0.616
  radA Streptococcus mitis NCTC 12261

61.894

99.561

0.616
  radA Streptococcus mitis SK321

61.894

99.561

0.616