Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   YSA_RS05425 Genome accession   NC_017986
Coordinates   1036922..1039138 (-) Length   738 a.a.
NCBI ID   WP_017147836.1    Uniprot ID   A0A7L9G9C5
Organism   Pseudomonas putida ND6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031922..1044138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSA_RS05390 (YSA_01927) murB 1032228..1033247 (-) 1020 WP_014754071.1 UDP-N-acetylmuramate dehydrogenase -
  YSA_RS05395 (YSA_01928) - 1033244..1033708 (-) 465 WP_014754072.1 low molecular weight protein-tyrosine-phosphatase -
  YSA_RS05400 (YSA_01930) kdsB 1033708..1034472 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  YSA_RS05405 (YSA_01932) - 1034469..1034654 (-) 186 WP_003247142.1 Trm112 family protein -
  YSA_RS05410 (YSA_01935) lpxK 1034699..1035700 (-) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  YSA_RS05415 (YSA_01936) - 1035700..1036134 (-) 435 WP_014754073.1 biopolymer transporter ExbD -
  YSA_RS05420 (YSA_01938) exbB 1036131..1036766 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  YSA_RS05425 (YSA_01942) comA 1036922..1039138 (-) 2217 WP_017147836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  YSA_RS05430 - 1039281..1039913 (+) 633 WP_012053304.1 DUF2062 domain-containing protein -
  YSA_RS05435 (YSA_01946) - 1039797..1040576 (-) 780 WP_003247128.1 ABC transporter permease -
  YSA_RS05440 (YSA_01947) - 1040573..1041505 (-) 933 WP_014754076.1 ABC transporter ATP-binding protein -
  YSA_RS05445 (YSA_01950) - 1041639..1042262 (-) 624 WP_003247126.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79550.40 Da        Isoelectric Point: 10.1006

>NTDB_id=51570 YSA_RS05425 WP_017147836.1 1036922..1039138(-) (comA) [Pseudomonas putida ND6]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLGRRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPWWAWLLVCLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPFGQIEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAE
AIARGLPIKRIIGGEALVDVPLEPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYGRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=51570 YSA_RS05425 WP_017147836.1 1036922..1039138(-) (comA) [Pseudomonas putida ND6]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTCTGGCCGTTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGCCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AACGCCCGGCCGGGCTGCTGAACCCGCACGGGCCTGACCGGGAAGCGCAGTTGCTGGGGCGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGACAGGCAGCGCTGGTGGCACTGGTGCTTGGCGATGGTGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCACGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGTGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGCTGGCTGGCGGGTGGTGGGGTGCCAGTGCAGCGGGCCTGTCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGCTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGGGG
GTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGGCCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCATTGGCGTTG
TTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAACAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTGGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGCTTTTGCTGCCTCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTACCCAGGGAGCCGGTGCCGTTTGGCCAAATCGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTCTTGCG
TACGCGGCATCACAGCCTGCTTTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATGCGGGCGGGGCCGAG
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGGAGCCTTGTGCCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGTTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTGCTGTTGGTCGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAACGGGCGTGGCTG
GCGGACACTGAAGTGCCGCGCATCGACTGGCTGCAGGCACCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCACGTGCAGGTGGTCG
AACGGTATGGGCGGCATGGGGTGGTGATGCATGATACGGCGGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAACGGCGATTCTGGCGTGATGTGGGGGGTGGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(12-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9G9C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.53

97.696

0.572
  comA Ralstonia pseudosolanacearum GMI1000

34.821

100

0.37

Multiple sequence alignment