Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   YSA_RS05420 Genome accession   NC_017986
Coordinates   1036131..1036766 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida ND6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031131..1041766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSA_RS05390 (YSA_01927) murB 1032228..1033247 (-) 1020 WP_014754071.1 UDP-N-acetylmuramate dehydrogenase -
  YSA_RS05395 (YSA_01928) - 1033244..1033708 (-) 465 WP_014754072.1 low molecular weight protein-tyrosine-phosphatase -
  YSA_RS05400 (YSA_01930) kdsB 1033708..1034472 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  YSA_RS05405 (YSA_01932) - 1034469..1034654 (-) 186 WP_003247142.1 Trm112 family protein -
  YSA_RS05410 (YSA_01935) lpxK 1034699..1035700 (-) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  YSA_RS05415 (YSA_01936) - 1035700..1036134 (-) 435 WP_014754073.1 biopolymer transporter ExbD -
  YSA_RS05420 (YSA_01938) exbB 1036131..1036766 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  YSA_RS05425 (YSA_01942) comA 1036922..1039138 (-) 2217 WP_017147836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  YSA_RS05430 - 1039281..1039913 (+) 633 WP_012053304.1 DUF2062 domain-containing protein -
  YSA_RS05435 (YSA_01946) - 1039797..1040576 (-) 780 WP_003247128.1 ABC transporter permease -
  YSA_RS05440 (YSA_01947) - 1040573..1041505 (-) 933 WP_014754076.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=51569 YSA_RS05420 WP_003247132.1 1036131..1036766(-) (exbB) [Pseudomonas putida ND6]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=51569 YSA_RS05420 WP_003247132.1 1036131..1036766(-) (exbB) [Pseudomonas putida ND6]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCACTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment