Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KZH40_RS01475 Genome accession   NZ_CP079921
Coordinates   315591..316196 (+) Length   201 a.a.
NCBI ID   WP_005600357.1    Uniprot ID   A0A9X4G287
Organism   Actinobacillus pleuropneumoniae strain P1875     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 310591..321196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZH40_RS01460 (KZH40_01480) potA 312714..313829 (+) 1116 WP_005600350.1 spermidine/putrescine ABC transporter ATP-binding protein PotA -
  KZH40_RS01465 (KZH40_01485) potB 313816..314682 (+) 867 WP_005600352.1 spermidine/putrescine ABC transporter permease PotB -
  KZH40_RS01470 (KZH40_01490) potC 314682..315449 (+) 768 WP_012262759.1 spermidine/putrescine ABC transporter permease PotC -
  KZH40_RS01475 (KZH40_01495) ruvA 315591..316196 (+) 606 WP_005600357.1 Holliday junction branch migration protein RuvA Machinery gene
  KZH40_RS01480 (KZH40_01500) ruvB 316215..317219 (+) 1005 WP_005600359.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KZH40_RS01485 (KZH40_01505) ubiG 317276..317980 (-) 705 WP_005600361.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  KZH40_RS01490 (KZH40_01510) gyrA 318160..320850 (+) 2691 WP_005596197.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22065.58 Da        Isoelectric Point: 6.7667

>NTDB_id=515520 KZH40_RS01475 WP_005600357.1 315591..316196(+) (ruvA) [Actinobacillus pleuropneumoniae strain P1875]
MIGRLHGKIIEKQPPEMVIDVQGVGYEVLLPMTSFYSLPQVGEEATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNG
VGPKLALAILSAMSVSQFANAVENEELAKLTKIPGIGRKTAERLLVELKGKFKGVAQSDFFEEHSVETIVATHSHDPADE
ARDALVALGYKLADAEKMIKKVNKAGATSEQLIREALKASL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=515520 KZH40_RS01475 WP_005600357.1 315591..316196(+) (ruvA) [Actinobacillus pleuropneumoniae strain P1875]
ATGATCGGAAGATTACACGGTAAAATTATTGAAAAACAACCGCCTGAAATGGTAATTGATGTCCAAGGTGTCGGGTATGA
AGTGCTATTGCCGATGACGAGCTTTTACAGCTTGCCGCAAGTAGGTGAAGAAGCCACTATTTTTACGCATTTAGTCGTAC
GTGAAGATGCACATTTATTATTTGGTTTTGCACAAAAGCAAGATAGAACTTTATTTCGTGAATTGATTAAAACCAACGGT
GTAGGGCCTAAATTAGCCCTTGCGATTTTATCAGCAATGTCAGTTTCACAATTTGCCAATGCTGTTGAAAATGAAGAACT
TGCCAAATTAACTAAAATTCCGGGCATTGGGCGTAAGACAGCCGAGCGTTTATTAGTAGAACTCAAAGGCAAATTCAAAG
GTGTGGCACAAAGTGATTTCTTTGAAGAGCATTCGGTTGAAACGATTGTTGCAACACATTCGCACGATCCGGCAGATGAA
GCCCGTGATGCTTTAGTAGCGTTAGGCTATAAACTCGCTGATGCTGAGAAGATGATTAAGAAAGTGAATAAAGCGGGTGC
AACCAGCGAACAATTAATTCGTGAAGCATTAAAAGCCTCTCTTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(157-199)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X4G287

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.383
  ruvA Streptococcus pneumoniae TIGR4

37.374

98.507

0.368
  ruvA Streptococcus pneumoniae R6

36.869

98.507

0.363
  ruvA Streptococcus pneumoniae D39

36.869

98.507

0.363