Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   JAN99_RS04385 Genome accession   NZ_CP065927
Coordinates   871601..872911 (+) Length   436 a.a.
NCBI ID   WP_085634321.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm9ST603     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 866601..877911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAN99_RS04370 (JAN99_04365) phoU 867192..867845 (+) 654 WP_002984514.1 phosphate signaling complex protein PhoU -
  JAN99_RS04375 (JAN99_04370) - 868050..870587 (+) 2538 WP_014407610.1 M1 family metallopeptidase -
  JAN99_RS04380 (JAN99_04375) ciaR 870934..871608 (+) 675 WP_002984519.1 response regulator transcription factor Regulator
  JAN99_RS04385 (JAN99_04380) ciaH 871601..872911 (+) 1311 WP_085634321.1 HAMP domain-containing sensor histidine kinase Regulator
  JAN99_RS04390 (JAN99_04385) rpsT 873036..873284 (-) 249 WP_009881183.1 30S ribosomal protein S20 -
  JAN99_RS04395 (JAN99_04390) coaA 873338..874258 (-) 921 WP_014407609.1 type I pantothenate kinase -
  JAN99_RS04400 (JAN99_04395) - 874526..875119 (+) 594 WP_136116136.1 class I SAM-dependent methyltransferase -
  JAN99_RS04405 (JAN99_04400) - 875772..876161 (+) 390 WP_011285547.1 cytidine deaminase -
  JAN99_RS04410 (JAN99_04405) - 876255..877307 (+) 1053 WP_002989701.1 BMP family protein -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50084.61 Da        Isoelectric Point: 9.2692

>NTDB_id=515370 JAN99_RS04385 WP_085634321.1 871601..872911(+) (ciaH) [Streptococcus pyogenes strain emm9ST603]
MNKLKKEILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALPDSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKRRLGSIETTSLMNFYGQEEKYHTITVRVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQN
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIAKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=515370 JAN99_RS04385 WP_085634321.1 871601..872911(+) (ciaH) [Streptococcus pyogenes strain emm9ST603]
ATGAATAAATTAAAAAAAGAGATTTTATCAGATAACTATAACCACTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGACAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGCCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAACGCCGGTTGGGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACTGTAAGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTACGAGCGCATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAACTAAGGACCCCTTTGGCGGTCTTACAGAATCGT
CTGGAATCGCTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACTAATTTATTAAATTTAGCAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAAC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGCGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.666

100

0.578

  ciaH Streptococcus pneumoniae Rx1

51.37

100

0.516

  ciaH Streptococcus pneumoniae D39

51.37

100

0.516

  ciaH Streptococcus pneumoniae R6

51.37

100

0.516

  ciaH Streptococcus pneumoniae TIGR4

51.37

100

0.516