Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JAN99_RS00730 Genome accession   NZ_CP065927
Coordinates   112280..112675 (+) Length   131 a.a.
NCBI ID   WP_111692973.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm9ST603     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107280..117675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAN99_RS00700 (JAN99_00695) - 108145..108453 (+) 309 WP_010921804.1 hypothetical protein -
  JAN99_RS00705 (JAN99_00700) proC 108536..109306 (-) 771 WP_111692971.1 pyrroline-5-carboxylate reductase -
  JAN99_RS00710 (JAN99_00705) pepA 109354..110421 (-) 1068 WP_011054119.1 glutamyl aminopeptidase -
  JAN99_RS00715 (JAN99_00710) - 110886..111170 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  JAN99_RS00720 (JAN99_00715) - 111167..111484 (+) 318 WP_111688394.1 thioredoxin family protein -
  JAN99_RS00725 (JAN99_00720) ytpR 111502..112128 (+) 627 WP_111692972.1 YtpR family tRNA-binding protein -
  JAN99_RS00730 (JAN99_00725) ssbA 112280..112675 (+) 396 WP_111692973.1 single-stranded DNA-binding protein Machinery gene
  JAN99_RS00735 (JAN99_00730) - 112934..113575 (-) 642 WP_002986504.1 deoxynucleoside kinase -
  JAN99_RS00740 (JAN99_00735) dusB 113595..114572 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  JAN99_RS00745 (JAN99_00740) hslO 114559..115431 (-) 873 WP_136106561.1 Hsp33 family molecular chaperone HslO -
  JAN99_RS00750 (JAN99_00745) rofA 115578..117071 (-) 1494 WP_136116305.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14817.98 Da        Isoelectric Point: 8.0157

>NTDB_id=515348 JAN99_RS00730 WP_111692973.1 112280..112675(+) (ssbA) [Streptococcus pyogenes strain emm9ST603]
MYNKVITIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=515348 JAN99_RS00730 WP_111692973.1 112280..112675(+) (ssbA) [Streptococcus pyogenes strain emm9ST603]
ATGTATAATAAAGTGATAACAATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACCGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397