NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	JAN99_RS01155	Genome accession	NZ_CP065927
Coordinates	210208..211569 (+)	Length	453 a.a.
NCBI ID	WP_111693002.1	Uniprot ID	-
Organism	Streptococcus pyogenes strain emm9ST603
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 205208..216569

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JAN99_RS01140 (JAN99_01135)	-	206902..208686 (+)	1785	WP_002992923.1	ABC transporter ATP-binding protein	-
JAN99_RS01145 (JAN99_01140)	-	208804..209571 (+)	768	WP_002986113.1	epoxyqueuosine reductase QueH	-
JAN99_RS01150 (JAN99_01145)	-	209681..210127 (+)	447	WP_002986111.1	dUTP diphosphatase	-
JAN99_RS01155 (JAN99_01150)	radA	210208..211569 (+)	1362	WP_111693002.1	DNA repair protein RadA	Machinery gene
JAN99_RS01160 (JAN99_01155)	-	211758..212255 (+)	498	WP_011017310.1	carbonic anhydrase	-
JAN99_RS01165 (JAN99_01160)	-	212636..212950 (+)	315	WP_000420682.1	YdcP family protein	-
JAN99_RS01170 (JAN99_01165)	-	212966..213352 (+)	387	WP_000985015.1	YdcP family protein	-
JAN99_RS01175 (JAN99_01170)	-	213381..214766 (+)	1386	WP_000813488.1	FtsK/SpoIIIE domain-containing protein	-
JAN99_RS01180 (JAN99_01175)	-	214769..214921 (+)	153	WP_000879507.1	hypothetical protein	-
JAN99_RS01185 (JAN99_01180)	mobT	214944..216149 (+)	1206	WP_000398284.1	MobT family relaxase	-
JAN99_RS01190 (JAN99_01185)	-	216192..216413 (+)	222	WP_001009056.1	hypothetical protein	-

Sequence

Protein

Download Length: 453 a.a. Molecular weight: 49382.69 Da Isoelectric Point: 6.0962

                                >NTDB_id=515349 JAN99_RS01155 WP_111693002.1 210208..211569(+) (radA) [Streptococcus pyogenes strain emm9ST603]

MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLAGEKSRPVKLKDVDNISYHRTQTDMSEFNRV

LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGPVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE

NIKPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER

HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQSLVTPTVFGNAR

RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR

RVTRIEQRINEAAKLGFTKVYAPKNALQGIDIPQGIEVVGVTTVGQVLKAVFS

Nucleotide

Download Length: 1362 bp

                                >NTDB_id=515349 JAN99_RS01155 WP_111693002.1 210208..211569(+) (radA) [Streptococcus pyogenes strain emm9ST603]

ATGGCAAAGAAAAAAGCAACCTTTATCTGTCAGGAGTGTGGCTACCAGTCGCCAAAGTATTTAGGGCGCTGTCCAAATTG

CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCCCGTGTTAGTCTAGCTGGAGAAAAGT

CCAGACCGGTTAAACTAAAAGATGTGGATAATATTAGTTATCACAGAACACAGACTGACATGTCTGAATTTAATAGAGTT

CTTGGAGGGGGTGTGGTTCCTGGAAGCTTGATTTTAATTGGTGGTGATCCAGGTATTGGAAAATCCACCTTACTCTTGCA

GGTATCCACGCAGCTCGCTAATAAGGGACCGGTTCTCTATGTGTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA

GTGAGCGTCTGGGTGATATTGACAATGAATTTTACCTCTATGCCGAAACCAATATGCAAGCTATTCGCACAGAAATTGAA

AATATTAAACCAGATTTTTTAATTATTGACTCCATTCAGACCATCATGAGCCCTGATATTACAGGTGTTCAAGGATCAGT

CAGTCAGGTGAGAGAAGTCACTGCAGAATTGATGCAGCTTGCAAAGACGAACAACATTGCAACCTTTATTGTGGGTCATG

TCACCAAGGAAGGAACCTTGGCTGGGCCTCGTATGTTAGAACACATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG

CATCACACCTTTCGCATTCTTCGGGCTGTGAAAAACCGCTTTGGCTCCACTAACGAGATCGGCATCTTTGAAATGCAGTC

TGGCGGCTTGGTAGAGGTCTTAAATCCTAGTCAAGTCTTTTTAGAGGAACGCTTAGATGGGGCAACAGGATCGGCTGTCG

TTGTAACGATGGAAGGAAGTCGTCCTATCTTAGCAGAGGTGCAATCTTTAGTGACACCAACCGTTTTTGGCAATGCCAGA

CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATAATGGCAGTTTTAGAAAAGCGCTGTGGTTTACTCTTACA

AAATCAAGATGCCTACCTCAAGTCGGCTGGTGGTGTCAAACTAGACGAACCTGCCATTGATTTGGCAGTCGCTGTGGCTA

TCGCATCCAGTTATAAGGAAAAACCAACCAGCCCTCAAGAAGCTTTCTTAGGCGAGATCGGGTTAACAGGTGAGATTCGG

CGAGTGACCCGTATTGAGCAACGGATTAATGAAGCAGCAAAGCTTGGCTTTACCAAGGTCTATGCTCCTAAAAATGCCTT

GCAAGGCATTGATATCCCTCAAGGTATTGAGGTTGTCGGAGTGACTACGGTTGGTCAGGTTTTAAAGGCAGTTTTTAGCT

AG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(56-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Streptococcus mitis NCTC 12261	85.651	100	0.857
radA	Streptococcus pneumoniae D39	85.43	100	0.854
radA	Streptococcus pneumoniae R6	85.43	100	0.854
radA	Streptococcus pneumoniae Rx1	85.43	100	0.854
radA	Streptococcus mitis SK321	85.43	100	0.854
radA	Streptococcus pneumoniae TIGR4	85.43	100	0.854
radA	Bacillus subtilis subsp. subtilis str. 168	61.369	100	0.614

Detailed information NTG0515349