Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JC282_RS12055 Genome accession   NZ_CP065925
Coordinates   2524423..2524929 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain SP_11304-1A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2519423..2529929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC282_RS12040 (JC282_12040) - 2520641..2522632 (+) 1992 WP_063278726.1 catalase -
  JC282_RS12395 - 2522846..2523220 (-) 375 WP_157980673.1 Abi family protein -
  JC282_RS12045 (JC282_12045) - 2523217..2523936 (-) 720 WP_015728519.1 Abi family protein -
  JC282_RS12050 (JC282_12050) rpsR 2524127..2524369 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JC282_RS12055 (JC282_12055) ssbA 2524423..2524929 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  JC282_RS12060 (JC282_12060) rpsF 2524952..2525248 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JC282_RS12065 (JC282_12065) sbi 2525585..2527105 (+) 1521 WP_140230391.1 Ig-binding surface protein Sbi/SpsK -
  JC282_RS12070 (JC282_12070) - 2527159..2527968 (-) 810 WP_140241061.1 ABC transporter permease subunit -
  JC282_RS12075 (JC282_12075) - 2527961..2528896 (-) 936 WP_096636734.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=515306 JC282_RS12055 WP_014614920.1 2524423..2524929(-) (ssbA) [Staphylococcus pseudintermedius strain SP_11304-1A]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=515306 JC282_RS12055 WP_014614920.1 2524423..2524929(-) (ssbA) [Staphylococcus pseudintermedius strain SP_11304-1A]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381