Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JC286_RS12315 Genome accession   NZ_CP065921
Coordinates   2577164..2577670 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain SP_11304-3A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2572164..2582670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC286_RS12820 - 2573083..2573214 (-) 132 WP_015728521.1 hypothetical protein -
  JC286_RS12300 (JC286_12300) - 2573383..2575374 (+) 1992 WP_096533761.1 catalase -
  JC286_RS12770 - 2575588..2575962 (-) 375 WP_157980673.1 Abi family protein -
  JC286_RS12775 - 2575959..2576366 (-) 408 WP_242060557.1 Abi family protein -
  JC286_RS12780 - 2576318..2576677 (-) 360 WP_242060558.1 hypothetical protein -
  JC286_RS12310 (JC286_12310) rpsR 2576868..2577110 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JC286_RS12315 (JC286_12315) ssbA 2577164..2577670 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  JC286_RS12320 (JC286_12320) rpsF 2577693..2577989 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JC286_RS12325 (JC286_12325) sbi 2578326..2579816 (+) 1491 WP_198461229.1 Ig-binding surface protein Sbi/SpsK -
  JC286_RS12330 (JC286_12330) - 2579870..2580679 (-) 810 WP_015728517.1 ABC transporter permease subunit -
  JC286_RS12335 (JC286_12335) - 2580672..2581607 (-) 936 WP_198458546.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=515239 JC286_RS12315 WP_014614920.1 2577164..2577670(-) (ssbA) [Staphylococcus pseudintermedius strain SP_11304-3A]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=515239 JC286_RS12315 WP_014614920.1 2577164..2577670(-) (ssbA) [Staphylococcus pseudintermedius strain SP_11304-3A]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381