Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JC281_RS12185 Genome accession   NZ_CP065920
Coordinates   2574422..2574928 (-) Length   168 a.a.
NCBI ID   WP_198456103.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_11306-1A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2569422..2579928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC281_RS12565 - 2570340..2570471 (-) 132 WP_015728521.1 hypothetical protein -
  JC281_RS12170 (JC281_12170) - 2570640..2572631 (+) 1992 WP_014614918.1 catalase -
  JC281_RS12535 - 2572845..2573219 (-) 375 WP_157980673.1 Abi family protein -
  JC281_RS12540 - 2573216..2573689 (-) 474 WP_242062913.1 Abi family protein -
  JC281_RS12545 - 2573693..2573935 (-) 243 WP_242062914.1 hypothetical protein -
  JC281_RS12180 (JC281_12180) rpsR 2574126..2574368 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JC281_RS12185 (JC281_12185) ssbA 2574422..2574928 (-) 507 WP_198456103.1 single-stranded DNA-binding protein Machinery gene
  JC281_RS12190 (JC281_12190) rpsF 2574951..2575247 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JC281_RS12195 (JC281_12195) sbi 2575584..2577080 (+) 1497 WP_065354653.1 Ig-binding surface protein Sbi/SpsK -
  JC281_RS12200 (JC281_12200) - 2577134..2577943 (-) 810 WP_187525938.1 ABC transporter permease subunit -
  JC281_RS12205 (JC281_12205) - 2577936..2578871 (-) 936 WP_014614924.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18716.37 Da        Isoelectric Point: 4.7278

>NTDB_id=515208 JC281_RS12185 WP_198456103.1 2574422..2574928(-) (ssbA) [Staphylococcus pseudintermedius strain SP_11306-1A]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNDQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=515208 JC281_RS12185 WP_198456103.1 2574422..2574928(-) (ssbA) [Staphylococcus pseudintermedius strain SP_11306-1A]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAGCAAG
GCCAAAATTCGTCTTATCAAAACAATGATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381