Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JC284_RS11805 Genome accession   NZ_CP065919
Coordinates   2506396..2506902 (-) Length   168 a.a.
NCBI ID   WP_130922016.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_11306-4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2501396..2511902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC284_RS11790 (JC284_11790) - 2502613..2504604 (+) 1992 WP_014614918.1 catalase -
  JC284_RS11795 (JC284_11795) - 2504818..2505909 (-) 1092 WP_198458543.1 Abi family protein -
  JC284_RS11800 (JC284_11800) rpsR 2506100..2506342 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JC284_RS11805 (JC284_11805) ssbA 2506396..2506902 (-) 507 WP_130922016.1 single-stranded DNA-binding protein Machinery gene
  JC284_RS11810 (JC284_11810) rpsF 2506925..2507221 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JC284_RS11815 (JC284_11815) sbi 2507558..2509078 (+) 1521 WP_198458544.1 Ig-binding surface protein Sbi/SpsK -
  JC284_RS11820 (JC284_11820) - 2509132..2509941 (-) 810 WP_198458545.1 ABC transporter permease subunit -
  JC284_RS11825 (JC284_11825) - 2509934..2510869 (-) 936 WP_198458546.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18768.45 Da        Isoelectric Point: 5.1957

>NTDB_id=515176 JC284_RS11805 WP_130922016.1 2506396..2506902(-) (ssbA) [Staphylococcus pseudintermedius strain SP_11306-4A]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQSNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=515176 JC284_RS11805 WP_130922016.1 2506396..2506902(-) (ssbA) [Staphylococcus pseudintermedius strain SP_11306-4A]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAAGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.667
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381