Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   I7845_RS17430 Genome accession   NZ_CP065824
Coordinates   3971555..3973780 (-) Length   741 a.a.
NCBI ID   WP_218819223.1    Uniprot ID   -
Organism   Pseudomonas tolaasii strain Pt11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3966555..3978780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7845_RS17395 (I7845_17395) murB 3966926..3967945 (-) 1020 WP_016969298.1 UDP-N-acetylmuramate dehydrogenase -
  I7845_RS17400 (I7845_17400) - 3967942..3968406 (-) 465 WP_016969297.1 low molecular weight protein-tyrosine-phosphatase -
  I7845_RS17405 (I7845_17405) kdsB 3968406..3969170 (-) 765 WP_177007112.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I7845_RS17410 (I7845_17410) - 3969167..3969352 (-) 186 WP_003174668.1 Trm112 family protein -
  I7845_RS17415 (I7845_17415) lpxK 3969376..3970386 (-) 1011 WP_177037937.1 tetraacyldisaccharide 4'-kinase -
  I7845_RS17420 (I7845_17420) - 3970386..3970814 (-) 429 WP_016969294.1 biopolymer transporter ExbD -
  I7845_RS17425 (I7845_17425) exbB 3970811..3971446 (-) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I7845_RS17430 (I7845_17430) comA 3971555..3973780 (-) 2226 WP_218819223.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I7845_RS17435 (I7845_17435) - 3973916..3974431 (+) 516 WP_016969291.1 DUF2062 domain-containing protein -
  I7845_RS17440 (I7845_17440) - 3974435..3975793 (-) 1359 WP_016969290.1 sensor histidine kinase -
  I7845_RS17445 (I7845_17445) - 3975780..3976508 (-) 729 WP_017254902.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80025.62 Da        Isoelectric Point: 10.2729

>NTDB_id=514778 I7845_RS17430 WP_218819223.1 3971555..3973780(-) (comA) [Pseudomonas tolaasii strain Pt11]
MRTGLFALGLGLLSLRFLPALPPLGWLLAMPVLALMLLPFRTHPLAFFLLGLSWACASAQSALEERLNPALEGQTRWVEG
RVVGLPQQTGTGVRFELADSRSRNAVLPKRIRVSWHAGPPVQSGERWRLALTFKRPLGLLNFHGFDYEAWLLAQRIGATA
SVKDGERLASARNAWRDPIRQRLMAVDAQGREAALVALVLGDGSGLGTDEWQILQDTGTVHLLVISGQHIGLLAGLIYGV
VAGLARYGCWPRTLPWLPWACGLAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWLPWLLALNGVLLLEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWSIWQVWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLAL
TGTALLAVPWLGEGLLWLAGGALDGLFALLALLAERSPAWVPAEVPLGYWWVSLAGAVLLLLPKGVPFRLLGWPMLLLSV
FPPREQVPHGQAEVVQLDVGQGQAVVVRTRHHTLLYDTGPRSGAIDLGARVVLPSLRKLGAGALDLMVLSHAHADHAGGA
AAVARGLPVKRVIGGETEGLPAFLDTQTCSSGERWVWDGVTFELWQWPGATSSNPRSCVLRIEANGEGLLLTGDIDRAAE
QAFLASPLAIRTDWLQAPHHGSRSSSSDAFLQQLAPDSVLISRGRGNAFGHPHPPVLARYQALGSQIHDSAEQGAVRVLL
GAFKPPTTARSQRRFWREALP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=514778 I7845_RS17430 WP_218819223.1 3971555..3973780(-) (comA) [Pseudomonas tolaasii strain Pt11]
ATGAGAACAGGGTTGTTCGCGCTCGGACTTGGCTTGCTATCGCTGCGATTCTTGCCCGCATTGCCGCCGTTGGGCTGGCT
GCTGGCCATGCCGGTGCTGGCATTGATGCTGTTGCCTTTTCGCACCCATCCGCTGGCGTTTTTCCTGCTGGGTTTGAGCT
GGGCGTGTGCCAGTGCGCAATCGGCGCTGGAGGAGCGGCTCAACCCGGCGCTGGAGGGGCAGACACGCTGGGTGGAAGGG
CGCGTGGTCGGGTTACCGCAGCAAACGGGGACGGGCGTGCGCTTTGAATTGGCCGACAGCCGGTCACGCAACGCTGTTTT
ACCCAAGCGTATCCGGGTGTCCTGGCATGCAGGCCCGCCCGTGCAAAGCGGCGAGCGCTGGCGTCTGGCGCTGACGTTTA
AGCGGCCGCTGGGGTTGCTCAATTTTCATGGCTTTGACTATGAGGCGTGGTTGCTGGCCCAGCGTATCGGTGCAACGGCT
TCGGTGAAAGATGGCGAGCGACTGGCAAGCGCCCGAAATGCCTGGCGCGACCCGATTCGTCAGCGCTTGATGGCCGTGGA
TGCGCAAGGGCGTGAAGCCGCACTGGTGGCCTTGGTACTGGGGGACGGCTCCGGGCTGGGAACCGACGAGTGGCAAATTC
TGCAAGACACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCATATCGGGCTGCTGGCGGGGCTGATCTACGGGGTG
GTCGCAGGGCTTGCACGGTATGGCTGTTGGCCTCGCACGTTGCCCTGGCTGCCGTGGGCGTGTGGGCTCGCGTTTGCTGC
AGCATTGAGCTATGGCCTGTTGGCAGGGTTTGGCGTGCCGGTGCAGCGGGCGTGTGTGATGGTCGGGCTGGTGTTGCTCT
GGCGCCTGCGTTTTCGGCACCTGGGCGTCTGGCTACCGTGGTTGCTGGCGCTCAATGGGGTATTGCTGCTTGAGCCATTG
GCCAGCTTGCAGCCGGGGTTCTGGTTGTCGTTCGCGGCGGTCGCGGTGCTGGTATTGGCTTTCGGCGGGCGGCTGGGCCC
GTGGAGCATCTGGCAGGTCTGGACCCGGCCACAGTGGCTGATCGCGATCGGTCTATTCCCGGTCCTGCTGGTGTTGGGTT
TGCCCATTAGTCTCAGCGCGCCGCTGGCCAATTTGTTTGCCGTGCCGTGGATCAGCCTGGTGGTGTTGCCTCTGGCCTTG
ACGGGTACCGCTCTGCTGGCTGTGCCGTGGCTGGGTGAAGGCTTGCTGTGGTTGGCCGGCGGGGCGCTGGATGGGCTGTT
CGCGCTGCTGGCGCTCTTGGCCGAGCGCTCGCCGGCCTGGGTTCCGGCCGAGGTGCCCTTGGGGTACTGGTGGGTAAGTC
TGGCAGGCGCGGTGTTGTTGCTGCTGCCCAAGGGCGTGCCGTTTCGATTGCTGGGCTGGCCGATGCTGTTGCTGTCTGTT
TTTCCACCCCGAGAGCAGGTGCCCCATGGGCAGGCCGAGGTGGTGCAGCTGGATGTCGGTCAGGGGCAGGCCGTGGTTGT
GCGCACCCGCCACCACACCTTGTTGTATGACACGGGCCCGCGCTCGGGGGCGATTGACCTGGGCGCGCGCGTGGTACTGC
CATCGTTGAGAAAACTCGGGGCAGGGGCGCTGGACCTGATGGTACTCAGCCATGCCCACGCCGATCACGCTGGAGGAGCG
GCGGCAGTCGCCCGCGGGCTGCCGGTCAAGCGGGTCATCGGTGGTGAAACCGAGGGTTTGCCGGCGTTTCTCGACACTCA
AACCTGCTCCAGTGGCGAGCGGTGGGTGTGGGACGGGGTGACATTTGAGTTGTGGCAGTGGCCTGGGGCTACTAGCAGCA
ACCCGAGGTCTTGTGTGTTGCGCATCGAGGCCAATGGCGAAGGTCTGCTGCTGACGGGTGATATCGATCGCGCTGCCGAA
CAGGCGTTTCTGGCTTCACCGCTGGCCATTCGCACCGATTGGCTGCAAGCGCCTCATCATGGCAGTCGCAGTTCTTCATC
CGACGCTTTCCTGCAACAGCTTGCCCCCGACTCGGTGTTGATTTCACGGGGGCGCGGCAATGCGTTCGGCCATCCCCATC
CGCCAGTGTTGGCGCGCTATCAGGCACTGGGCAGCCAAATTCATGACAGCGCCGAGCAGGGCGCCGTGCGTGTGCTACTG
GGGGCGTTCAAACCACCGACTACTGCGCGCAGTCAACGTCGTTTCTGGCGCGAAGCGTTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.031

0.587
  comA Ralstonia pseudosolanacearum GMI1000

36.835

100

0.393