Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   I7845_RS17425 Genome accession   NZ_CP065824
Coordinates   3970811..3971446 (-) Length   211 a.a.
NCBI ID   WP_016969293.1    Uniprot ID   A0A0W0I137
Organism   Pseudomonas tolaasii strain Pt11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3965811..3976446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7845_RS17390 (I7845_17390) - 3966192..3966863 (+) 672 WP_016969299.1 Bax inhibitor-1/YccA family protein -
  I7845_RS17395 (I7845_17395) murB 3966926..3967945 (-) 1020 WP_016969298.1 UDP-N-acetylmuramate dehydrogenase -
  I7845_RS17400 (I7845_17400) - 3967942..3968406 (-) 465 WP_016969297.1 low molecular weight protein-tyrosine-phosphatase -
  I7845_RS17405 (I7845_17405) kdsB 3968406..3969170 (-) 765 WP_177007112.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I7845_RS17410 (I7845_17410) - 3969167..3969352 (-) 186 WP_003174668.1 Trm112 family protein -
  I7845_RS17415 (I7845_17415) lpxK 3969376..3970386 (-) 1011 WP_177037937.1 tetraacyldisaccharide 4'-kinase -
  I7845_RS17420 (I7845_17420) - 3970386..3970814 (-) 429 WP_016969294.1 biopolymer transporter ExbD -
  I7845_RS17425 (I7845_17425) exbB 3970811..3971446 (-) 636 WP_016969293.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I7845_RS17430 (I7845_17430) comA 3971555..3973780 (-) 2226 WP_218819223.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  I7845_RS17435 (I7845_17435) - 3973916..3974431 (+) 516 WP_016969291.1 DUF2062 domain-containing protein -
  I7845_RS17440 (I7845_17440) - 3974435..3975793 (-) 1359 WP_016969290.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23007.15 Da        Isoelectric Point: 6.8771

>NTDB_id=514777 I7845_RS17425 WP_016969293.1 3970811..3971446(-) (exbB) [Pseudomonas tolaasii strain Pt11]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=514777 I7845_RS17425 WP_016969293.1 3970811..3971446(-) (exbB) [Pseudomonas tolaasii strain Pt11]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGTATCACGCCTGAGCATCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTGGACAAGGAAAAACTCAAGGAGCTGCGCGCCAATTCGCCCCTGGGTGAAATCCTCGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCCGCGCGGGTCATCCATGAAATGGAGCGTTATAT
CAATGCGCTCGGCACCATCGCCGCCATGGCTCCATTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCTTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCGGGTGGTATTTCCAAAGCATTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTATTTTTCCACCGTTTCCTGCAGCGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGGGATGTCGATTTCGTTGAGGGCCGAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0I137

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839