Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   I7831_RS10490 Genome accession   NZ_CP065797
Coordinates   2129530..2130405 (-) Length   291 a.a.
NCBI ID   WP_069821932.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain GDY8P168P     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2124530..2135405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7831_RS10475 (I7831_10475) xerC 2124785..2125675 (-) 891 WP_037538546.1 tyrosine recombinase XerC -
  I7831_RS10480 (I7831_10480) trmFO 2125794..2127101 (-) 1308 WP_041080450.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  I7831_RS10485 (I7831_10485) topA 2127258..2129324 (-) 2067 WP_002483473.1 type I DNA topoisomerase -
  I7831_RS10490 (I7831_10490) dprA 2129530..2130405 (-) 876 WP_069821932.1 DNA-processing protein DprA Machinery gene
  I7831_RS10495 (I7831_10495) sucD 2130713..2131618 (-) 906 WP_002483475.1 succinate--CoA ligase subunit alpha -
  I7831_RS10500 (I7831_10500) sucC 2131640..2132806 (-) 1167 WP_002483476.1 ADP-forming succinate--CoA ligase subunit beta -
  I7831_RS10505 (I7831_10505) - 2132914..2133684 (-) 771 WP_037538550.1 ribonuclease HII -
  I7831_RS10510 (I7831_10510) ylqF 2133691..2134551 (-) 861 WP_069795372.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33744.43 Da        Isoelectric Point: 10.3610

>NTDB_id=514683 I7831_RS10490 WP_069821932.1 2129530..2130405(-) (dprA) [Staphylococcus saprophyticus strain GDY8P168P]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNFEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=514683 I7831_RS10490 WP_069821932.1 2129530..2130405(-) (dprA) [Staphylococcus saprophyticus strain GDY8P168P]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTTGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGCACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGTGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375