Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   I8N73_RS18750 Genome accession   NZ_CP065791
Coordinates   3805019..3805138 (+) Length   39 a.a.
NCBI ID   WP_041482476.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM279     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3800019..3810138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N73_RS18730 (I8N73_18730) - 3800369..3800881 (+) 513 Protein_3659 bacteriocin biosynthesis protein AlbG -
  I8N73_RS18735 (I8N73_18735) - 3800888..3802264 (-) 1377 WP_199022226.1 YncE family protein -
  I8N73_RS18740 (I8N73_18740) - 3802304..3803659 (-) 1356 WP_199022227.1 YncE family protein -
  I8N73_RS18745 (I8N73_18745) rapF 3803890..3805035 (+) 1146 WP_080130556.1 tetratricopeptide repeat protein Regulator
  I8N73_RS18750 (I8N73_18750) phrF 3805019..3805138 (+) 120 WP_041482476.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  I8N73_RS18755 (I8N73_18755) - 3805336..3805539 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  I8N73_RS18760 (I8N73_18760) - 3805553..3805756 (+) 204 WP_007407641.1 hypothetical protein -
  I8N73_RS18765 (I8N73_18765) - 3805791..3805976 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  I8N73_RS18770 (I8N73_18770) - 3806162..3806443 (+) 282 WP_045209208.1 hypothetical protein -
  I8N73_RS18775 (I8N73_18775) - 3806487..3806999 (+) 513 WP_199022228.1 stage II sporulation protein M -
  I8N73_RS18780 (I8N73_18780) - 3807590..3807808 (-) 219 WP_003151056.1 helix-turn-helix transcriptional regulator -
  I8N73_RS18785 (I8N73_18785) speB 3807976..3808848 (-) 873 WP_007614448.1 agmatinase -
  I8N73_RS18790 (I8N73_18790) speE 3808907..3809737 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4267.13 Da        Isoelectric Point: 10.0233

>NTDB_id=514581 I8N73_RS18750 WP_041482476.1 3805019..3805138(+) (phrF) [Bacillus velezensis strain LBUM279]
MKLKYKLALTCLAVSTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=514581 I8N73_RS18750 WP_041482476.1 3805019..3805138(+) (phrF) [Bacillus velezensis strain LBUM279]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462