Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   I8N73_RS17805 Genome accession   NZ_CP065791
Coordinates   3614926..3615615 (-) Length   229 a.a.
NCBI ID   WP_199022660.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM279     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3609926..3620615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N73_RS17770 (I8N73_17770) fliW 3610017..3610448 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  I8N73_RS17775 (I8N73_17775) - 3610478..3611047 (-) 570 WP_007407476.1 DUF6470 family protein -
  I8N73_RS17780 (I8N73_17780) flgL 3611138..3612055 (-) 918 WP_015240685.1 flagellar hook-associated protein FlgL -
  I8N73_RS17785 (I8N73_17785) flgK 3612067..3613584 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  I8N73_RS17790 (I8N73_17790) - 3613600..3614082 (-) 483 WP_003151394.1 flagellar protein FlgN -
  I8N73_RS17795 (I8N73_17795) flgM 3614097..3614363 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  I8N73_RS17800 (I8N73_17800) - 3614433..3614852 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  I8N73_RS17805 (I8N73_17805) comFC 3614926..3615615 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  I8N73_RS17810 (I8N73_17810) - 3615621..3615905 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  I8N73_RS17815 (I8N73_17815) comFA 3615963..3617348 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  I8N73_RS17820 (I8N73_17820) - 3617457..3618305 (-) 849 WP_003151387.1 DegV family protein -
  I8N73_RS17825 (I8N73_17825) degU 3618403..3619092 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I8N73_RS17830 (I8N73_17830) degS 3619169..3620332 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25243.86 Da        Isoelectric Point: 8.2927

>NTDB_id=514573 I8N73_RS17805 WP_199022660.1 3614926..3615615(-) (comFC) [Bacillus velezensis strain LBUM279]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRRNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=514573 I8N73_RS17805 WP_199022660.1 3614926..3615615(-) (comFC) [Bacillus velezensis strain LBUM279]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCGAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594