Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   I8N72_RS11670 Genome accession   NZ_CP065790
Coordinates   2437637..2437972 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM1082     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2432637..2442972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N72_RS11650 (I8N72_11650) gcvT 2433248..2434348 (-) 1101 WP_015388009.1 glycine cleavage system aminomethyltransferase GcvT -
  I8N72_RS11655 (I8N72_11655) - 2434771..2436441 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  I8N72_RS11660 (I8N72_11660) - 2436459..2437253 (+) 795 WP_014305407.1 YqhG family protein -
  I8N72_RS11665 (I8N72_11665) sinI 2437430..2437603 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  I8N72_RS11670 (I8N72_11670) sinR 2437637..2437972 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  I8N72_RS11675 (I8N72_11675) tasA 2438020..2438805 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  I8N72_RS11680 (I8N72_11680) sipW 2438869..2439453 (-) 585 WP_012117977.1 signal peptidase I SipW -
  I8N72_RS11685 (I8N72_11685) tapA 2439425..2440096 (-) 672 WP_015388007.1 amyloid fiber anchoring/assembly protein TapA -
  I8N72_RS11690 (I8N72_11690) - 2440356..2440685 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  I8N72_RS11695 (I8N72_11695) - 2440725..2440904 (-) 180 WP_003153093.1 YqzE family protein -
  I8N72_RS11700 (I8N72_11700) comGG 2440961..2441338 (-) 378 WP_015388005.1 competence type IV pilus minor pilin ComGG Machinery gene
  I8N72_RS11705 (I8N72_11705) comGF 2441339..2441734 (-) 396 WP_015388004.1 competence type IV pilus minor pilin ComGF -
  I8N72_RS11710 (I8N72_11710) comGE 2441748..2442062 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  I8N72_RS11715 (I8N72_11715) comGD 2442046..2442483 (-) 438 WP_015388002.1 competence type IV pilus minor pilin ComGD Machinery gene
  I8N72_RS11720 (I8N72_11720) comGC 2442473..2442781 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=514476 I8N72_RS11670 WP_003153104.1 2437637..2437972(+) (sinR) [Bacillus velezensis strain LBUM1082]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=514476 I8N72_RS11670 WP_003153104.1 2437637..2437972(+) (sinR) [Bacillus velezensis strain LBUM1082]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991