Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   I8N71_RS17175 Genome accession   NZ_CP065789
Coordinates   3256694..3256834 (-) Length   46 a.a.
NCBI ID   WP_003220708.1    Uniprot ID   G4P060
Organism   Bacillus subtilis strain LBUM979     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3251694..3261834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N71_RS17150 (I8N71_17150) yuxO 3252008..3252388 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  I8N71_RS17155 (I8N71_17155) comA 3252407..3253051 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  I8N71_RS17160 (I8N71_17160) comP 3253132..3255440 (-) 2309 Protein_3330 two-component system sensor histidine kinase ComP -
  I8N71_RS17165 (I8N71_17165) comX 3255455..3255622 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  I8N71_RS17170 (I8N71_17170) comQ 3255610..3256509 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  I8N71_RS17175 (I8N71_17175) degQ 3256694..3256834 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  I8N71_RS17180 (I8N71_17180) - 3257056..3257181 (+) 126 WP_003228793.1 hypothetical protein -
  I8N71_RS17185 (I8N71_17185) - 3257295..3257663 (+) 369 WP_003243784.1 hypothetical protein -
  I8N71_RS17190 (I8N71_17190) pdeH 3257639..3258868 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -
  I8N71_RS17195 (I8N71_17195) pncB 3259005..3260477 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  I8N71_RS17200 (I8N71_17200) pncA 3260493..3261044 (-) 552 WP_003243099.1 isochorismatase family cysteine hydrolase -
  I8N71_RS17205 (I8N71_17205) yueI 3261141..3261539 (-) 399 WP_003242987.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5546.44 Da        Isoelectric Point: 6.2559

>NTDB_id=514420 I8N71_RS17175 WP_003220708.1 3256694..3256834(-) (degQ) [Bacillus subtilis strain LBUM979]
MEKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=514420 I8N71_RS17175 WP_003220708.1 3256694..3256834(-) (degQ) [Bacillus subtilis strain LBUM979]
ATGGAAAAGAAACTTGAAGAAGTAAAACAATTGTTATTCCGACTCGAACTTGATATTAAAGAAACGACAGATTCATTACG
AAACATTAACAAAAGCATTGATCAACTCGATAAATACAATTATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P060

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

100

100

1