Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   KV381_RS33745 Genome accession   NZ_CP079114
Coordinates   7740082..7742520 (-) Length   812 a.a.
NCBI ID   WP_218786992.1    Uniprot ID   -
Organism   Streptomyces sp. WY228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7735082..7747520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS33725 (KV381_33725) - 7735615..7736511 (-) 897 WP_030081602.1 LysR family transcriptional regulator -
  KV381_RS33730 (KV381_33730) - 7736609..7737313 (+) 705 WP_078611157.1 succinate dehydrogenase cytochrome b subunit -
  KV381_RS33735 (KV381_33735) - 7737315..7739264 (+) 1950 WP_086779305.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  KV381_RS33740 (KV381_33740) - 7739261..7740007 (+) 747 WP_030081608.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  KV381_RS33745 (KV381_33745) uvrA 7740082..7742520 (-) 2439 WP_218786992.1 excinuclease ABC subunit UvrA Machinery gene
  KV381_RS33750 (KV381_33750) - 7742623..7743057 (-) 435 WP_030622878.1 nuclear transport factor 2 family protein -
  KV381_RS33755 (KV381_33755) - 7743098..7744129 (-) 1032 WP_030081614.1 MsnO8 family LLM class oxidoreductase -
  KV381_RS33760 (KV381_33760) - 7744207..7744695 (+) 489 WP_098026502.1 hypothetical protein -
  KV381_RS33765 (KV381_33765) - 7744714..7744929 (-) 216 WP_030081618.1 dodecin -
  KV381_RS33770 (KV381_33770) - 7745133..7746389 (+) 1257 WP_030081620.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 86295.60 Da        Isoelectric Point: 6.7818

>NTDB_id=514238 KV381_RS33745 WP_218786992.1 7740082..7742520(-) (uvrA) [Streptomyces sp. WY228]
MPSPHDPYVRVRGAREHNLKDVQVDIPRDTLTVFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGDYPPGAERLDSDSFSPNTAVGACPECHGLGRIHRTDEEL
LVPDPALSIRDGAIAAWPGAWQGKNLRDVLDALGYDVDRPWRELDPKDREWILFTDEQPVVTVHPVRDAGRIQRPYQGTY
MSARRYVLHTFADTKSRSLRAKAERFLTSAPCPVCGGSRLRAEAMAVTFAGRTIAELAGLPLSDLAEVLSGAGAGGAGAG
GEETARVLTGDLLARIGTVTELGLGYLSLDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLGVL
GRLKEAGNSVFVVEHQMDVVRRADWLVDVGPLAGEHGGRVLHSGPPEGLAQVPESATRRFLFPEGGQGAGPVRRARTPSG
WLRLGGVERHNVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGVLADRQAGEEPGVAERYCAEATGLEAVDRLVQVDQ
KPIGRTPRSNLATYTGLFDAVRKLFARTEKARERGYGAGRFSFNVSGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGAR
YNPETLEVTLDGLTIAQALDLTVESAASFFAGTPAAERALTTLLDVGLGYLRLGQPATELSGGEAQRIKLAAELQRTRRG
HTLYLLDEPTTGLHPADVEVLMRQLHALVDGGSTVVVVEHDMAVVAGADHVIDLGPEGGDRGGRIVATGTPAEVARAAAS
RTAPYLAKALRR

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=514238 KV381_RS33745 WP_218786992.1 7740082..7742520(-) (uvrA) [Streptomyces sp. WY228]
ATGCCCTCCCCCCACGATCCGTACGTCCGCGTGCGCGGCGCCCGCGAGCACAACCTCAAGGACGTCCAGGTCGACATCCC
GCGCGACACCCTGACGGTCTTCACGGGCGTGTCGGGCTCGGGGAAGTCCTCGCTGGCCTTCGGGACGCTCTACGCGGAGG
CCCAGCGCCGCTACTTCGAGTCCGTCGCGCCGTACGCGCGGCGGCTGATCCATCAGGTGGGCGCACCGGCGGTCGGGGAG
ATCACCGGGCTGCCGCCCGCCGTCTCGCTGGAGCAGCGGCGCTCCGCGCCGGGGGCCCGGTCGTCCGTCGGGACGGTCAC
CACCCTCTCCAACTCGCTGCGGATGCTCTTCTCCCGGGCCGGGGACTATCCACCGGGGGCCGAGCGGCTGGACTCCGACT
CCTTCTCCCCCAACACCGCCGTCGGCGCGTGCCCGGAGTGCCACGGGCTGGGGCGGATCCACCGGACGGACGAGGAGCTG
CTGGTCCCGGACCCGGCGTTGTCGATCCGGGACGGGGCGATCGCCGCGTGGCCGGGGGCCTGGCAGGGCAAGAATCTGCG
GGATGTGCTGGACGCGCTGGGGTACGACGTCGACCGGCCGTGGCGGGAGCTGGATCCGAAGGACCGCGAGTGGATCCTGT
TCACCGACGAGCAGCCGGTGGTGACGGTCCATCCGGTACGGGACGCCGGCCGGATCCAACGCCCGTACCAGGGTACGTAC
ATGAGCGCGCGCCGCTATGTGCTGCACACCTTCGCCGACACCAAGAGCCGTTCCCTGCGGGCGAAGGCGGAGCGTTTCCT
GACCAGTGCCCCGTGTCCGGTGTGCGGTGGGAGCCGGCTGCGGGCCGAGGCGATGGCGGTGACCTTCGCCGGGCGGACCA
TCGCGGAGCTGGCCGGGCTGCCGCTGTCCGATCTGGCCGAGGTGCTGTCGGGTGCCGGGGCCGGCGGTGCGGGCGCGGGC
GGTGAGGAGACGGCCCGGGTGCTGACGGGCGATCTGCTGGCGCGGATCGGGACGGTGACGGAGCTGGGGCTCGGCTATCT
GAGCCTGGACCGGACGGCCCCGACCCTGTCCTCCGGTGAGCTGCAACGGCTGCGGCTGGCCACGCAGTTGCGGTCGGGAC
TGTTCGGCGTGGTCTATGTGCTGGACGAGCCGTCGGCCGGGCTGCACCCGGCGGACACCGAGGCGCTGCTCGGGGTGCTG
GGGCGGCTGAAGGAGGCCGGGAACTCGGTCTTCGTGGTGGAGCACCAGATGGATGTGGTGCGGCGGGCGGACTGGCTGGT
GGACGTGGGCCCGCTGGCCGGGGAGCACGGCGGGCGGGTGCTGCACAGCGGACCGCCGGAAGGGCTCGCCCAGGTCCCGG
AGTCGGCGACGCGCCGCTTCCTGTTCCCGGAGGGCGGACAGGGGGCCGGGCCGGTACGCCGGGCGCGTACGCCGTCCGGG
TGGCTCCGGCTCGGCGGTGTGGAGCGGCACAATGTGCGGGGCGTCGACGCGGCGTTCCCGCTCGGGGTGTTCACGGCGGT
GACCGGGGTGTCCGGCTCGGGCAAGTCGACCCTGGTCGGCCAGGTGCTCGCCGGAGTGCTGGCGGACCGGCAGGCGGGCG
AGGAGCCCGGTGTGGCCGAGCGGTACTGCGCGGAGGCCACCGGCCTGGAGGCGGTGGACCGGCTCGTCCAGGTCGACCAG
AAGCCCATCGGCCGGACGCCCCGGTCCAATCTGGCCACGTACACCGGCCTGTTCGACGCGGTACGCAAGCTCTTCGCGCG
GACGGAGAAGGCGCGGGAGCGCGGCTACGGCGCGGGGCGGTTCTCGTTCAACGTGAGCGGCGGGCGGTGCGAGACCTGCC
AGGGCGAGGGCTTCGTCTCGGTGGAGCTGCTGTTCCTCCCGAGCACCTACGCGCCCTGCCCGGACTGTCACGGTGCGCGC
TACAACCCGGAGACGCTGGAGGTCACCCTCGACGGTCTGACGATCGCTCAGGCCCTGGACCTCACCGTGGAGTCGGCGGC
CTCGTTCTTCGCCGGGACGCCGGCCGCCGAGCGTGCGCTGACCACTTTGCTGGACGTCGGGCTCGGATATCTGCGGCTCG
GCCAGCCCGCCACGGAGCTGTCCGGCGGCGAGGCGCAGCGCATCAAGCTGGCGGCCGAGCTCCAGCGCACCCGGCGCGGG
CACACGCTGTATCTGCTGGACGAGCCGACGACGGGGCTGCATCCGGCCGATGTGGAGGTGTTGATGCGGCAGTTGCACGC
GCTGGTCGACGGCGGGAGCACGGTGGTGGTCGTGGAGCACGACATGGCCGTGGTGGCGGGCGCGGACCATGTCATCGACC
TGGGGCCCGAGGGCGGGGACCGGGGCGGGCGGATCGTGGCGACCGGCACTCCGGCGGAGGTGGCGCGTGCCGCCGCGAGC
CGCACGGCGCCGTATCTGGCCAAGGCACTGCGGCGCTAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-265)

ABC transporter (ABC_tran)

(494-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

43.251

84.852

0.367
  uvrA Streptococcus pneumoniae TIGR4

43.251

84.852

0.367
  uvrA Streptococcus pneumoniae D39

43.251

84.852

0.367