Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   I6G54_RS15640 Genome accession   NZ_CP065743
Coordinates   2800377..2801090 (-) Length   237 a.a.
NCBI ID   WP_001979951.1    Uniprot ID   -
Organism   Bacillus tropicus strain FDAARGOS_897     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2795377..2806090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G54_RS15625 (I6G54_15625) hitR 2797123..2797800 (+) 678 WP_002021099.1 envelope stress response regulator transcription factor HitR -
  I6G54_RS15630 (I6G54_15630) hitS 2797797..2798885 (+) 1089 WP_033691618.1 envelope stress sensor histidine kinase HitS -
  I6G54_RS15635 (I6G54_15635) - 2798964..2800376 (-) 1413 WP_001979949.1 sensor histidine kinase -
  I6G54_RS15640 (I6G54_15640) scnR 2800377..2801090 (-) 714 WP_001979951.1 response regulator transcription factor Regulator
  I6G54_RS15645 (I6G54_15645) - 2801441..2801791 (-) 351 WP_001979953.1 YxeA family protein -
  I6G54_RS15650 (I6G54_15650) - 2801814..2802545 (-) 732 WP_001979955.1 ABC transporter permease -
  I6G54_RS15655 (I6G54_15655) - 2802558..2803310 (-) 753 WP_001979957.1 ABC transporter permease -
  I6G54_RS15660 (I6G54_15660) - 2803307..2804224 (-) 918 WP_001979959.1 ATP-binding cassette domain-containing protein -
  I6G54_RS15665 (I6G54_15665) - 2804718..2805437 (+) 720 WP_000818985.1 3-ketoacyl-ACP reductase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26956.35 Da        Isoelectric Point: 5.7510

>NTDB_id=513839 I6G54_RS15640 WP_001979951.1 2800377..2801090(-) (scnR) [Bacillus tropicus strain FDAARGOS_897]
MENLKDKKILIVDDEHEIRIMIEKLLRKEGFFRIYTTGDCTSALSFCQTNNPDIAILDVMLPDGDGFSLLSSIRQFSTIP
VLFLSARGEDEDRLLGLGLGADDYLVKPFLPRELVLRLIAILKRVYSSSIADRLSTFKLGEQIVDLESAVVYRGQKEIPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIHLLTFRGLGYKLLVKETY

Nucleotide


Download         Length: 714 bp        

>NTDB_id=513839 I6G54_RS15640 WP_001979951.1 2800377..2801090(-) (scnR) [Bacillus tropicus strain FDAARGOS_897]
ATGGAAAATTTAAAAGACAAAAAAATATTAATTGTAGACGATGAACATGAAATCAGAATAATGATTGAAAAACTTTTAAG
AAAAGAGGGATTTTTTCGTATTTATACTACTGGTGACTGTACCTCTGCTCTATCATTTTGTCAGACAAACAATCCAGATA
TCGCGATTCTAGATGTTATGTTACCTGATGGTGACGGATTTTCATTACTGTCTTCCATTAGGCAATTTTCAACTATACCA
GTTCTTTTTCTTTCCGCGCGAGGAGAGGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACTTGGTAAA
ACCGTTTTTGCCACGTGAGTTGGTATTGCGGCTAATAGCGATTTTGAAACGTGTATACTCCTCCTCAATCGCAGATCGTC
TATCTACTTTTAAGTTAGGAGAACAAATTGTCGATCTCGAAAGTGCTGTTGTGTACAGAGGACAGAAAGAAATTCCCTTG
ACAGCAAAAGAGCATGCCATTCTTGTAAAACTCTATGAAAATCAAGGGCGAATCATTACAAATGATGCCTTATGTCAAGC
AGTTTGGGGAGATGACAGCTACGGTCTTGAAAATACATTAATGGTTCACATCAGGCGGATACGTGAAAAGATTGAGCTGG
ACCCTTCCAAACCAATCCATCTACTTACCTTCAGGGGACTAGGATATAAATTACTAGTAAAGGAGACATATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.649

97.468

0.494
  micA Streptococcus pneumoniae Cp1015

41.304

97.046

0.401
  vicR Streptococcus mutans UA159

39.827

97.468

0.388