Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KWY99_RS02100 Genome accession   NZ_CP078118
Coordinates   392216..392635 (-) Length   139 a.a.
NCBI ID   WP_017147167.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain MS11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 387216..397635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY99_RS02075 (KWY99_02075) - 388260..388430 (-) 171 WP_167494755.1 hypothetical protein -
  KWY99_RS02080 (KWY99_02080) - 388444..389228 (-) 785 Protein_388 opacity family porin -
  KWY99_RS02085 (KWY99_02085) - 389724..390107 (-) 384 Protein_389 pilin -
  KWY99_RS02090 (KWY99_02090) pilE 390225..390656 (-) 432 WP_003696281.1 pilin Machinery gene
  KWY99_RS02095 (KWY99_02095) lpxC 390762..391685 (-) 924 WP_003696279.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  KWY99_RS02100 (KWY99_02100) pilE 392216..392635 (-) 420 WP_017147167.1 pilin Machinery gene
  KWY99_RS02105 (KWY99_02105) - 392731..393147 (-) 417 Protein_393 pilin -
  KWY99_RS02110 (KWY99_02110) - 393607..394551 (-) 945 WP_003689774.1 IS110-like element ISNgo3 family transposase -
  KWY99_RS02115 (KWY99_02115) - 394766..395953 (-) 1188 WP_003689773.1 zonular occludens toxin family protein -
  KWY99_RS02120 (KWY99_02120) - 395954..396238 (-) 285 WP_003689770.1 DUF2523 domain-containing protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14883.43 Da        Isoelectric Point: 5.7587

>NTDB_id=513799 KWY99_RS02100 WP_017147167.1 392216..392635(-) (pilE) [Neisseria gonorrhoeae strain MS11]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPEDNTSAGVASSPTDIKGKYVQSVTVANGVVTAEMASTGVNKEI
QGKRLSLWAKRENGSVKWFCGQPVTRAAKDDDAVTADGNNKIDTKHLPSTCRDTSSAGK

Nucleotide


Download         Length: 420 bp        

>NTDB_id=513799 KWY99_RS02100 WP_017147167.1 392216..392635(-) (pilE) [Neisseria gonorrhoeae strain MS11]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACACTTCTGCCGGCGTGGCATCCTCCCCCACCGACATCAAAG
GCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATC
CAAGGCAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGC
CGCCAAAGACGACGACGCCGTCACCGCCGACGGCAACAACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACA
CTTCATCTGCCGGTAAGTGA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(14-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

76.087

99.281

0.755
  pilE Neisseria gonorrhoeae MS11

71.631

100

0.727