Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6G25_RS01995 Genome accession   NZ_CP065729
Coordinates   379173..379496 (+) Length   107 a.a.
NCBI ID   WP_041636417.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain FDAARGOS_868     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374173..384496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G25_RS01955 (I6G25_01955) - 374227..374418 (+) 192 WP_103214485.1 YqgQ family protein -
  I6G25_RS01960 (I6G25_01960) - 374415..375383 (+) 969 WP_103214484.1 ROK family glucokinase -
  I6G25_RS01965 (I6G25_01965) - 375383..375694 (+) 312 WP_086038848.1 MTH1187 family thiamine-binding protein -
  I6G25_RS01970 (I6G25_01970) - 375720..375959 (-) 240 WP_041636024.1 DUF2759 domain-containing protein -
  I6G25_RS01975 (I6G25_01975) - 376049..376669 (+) 621 WP_103214483.1 MBL fold metallo-hydrolase -
  I6G25_RS01980 (I6G25_01980) - 376696..376944 (-) 249 WP_041636023.1 DUF2626 domain-containing protein -
  I6G25_RS01985 (I6G25_01985) comGA 377156..378127 (+) 972 WP_012657092.1 competence type IV pilus ATPase ComGA Machinery gene
  I6G25_RS01990 (I6G25_01990) comGB 378102..379151 (+) 1050 WP_181451716.1 competence type IV pilus assembly protein ComGB -
  I6G25_RS01995 (I6G25_01995) comGC 379173..379496 (+) 324 WP_041636417.1 competence type IV pilus major pilin ComGC Machinery gene
  I6G25_RS02000 (I6G25_02000) - 379489..379914 (+) 426 WP_012657089.1 type II secretion system protein -
  I6G25_RS02005 (I6G25_02005) - 379901..380143 (+) 243 WP_133422303.1 hypothetical protein -
  I6G25_RS02010 (I6G25_02010) - 380088..380540 (+) 453 WP_101140317.1 competence type IV pilus minor pilin ComGF -
  I6G25_RS02015 (I6G25_02015) - 380701..381207 (+) 507 WP_101140318.1 shikimate kinase -
  I6G25_RS02020 (I6G25_02020) gcvT 381345..382430 (+) 1086 WP_101140329.1 glycine cleavage system aminomethyltransferase GcvT -
  I6G25_RS02025 (I6G25_02025) gcvPA 382443..383786 (+) 1344 WP_012657085.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11848.98 Da        Isoelectric Point: 8.4918

>NTDB_id=513632 I6G25_RS01995 WP_041636417.1 379173..379496(+) (comGC) [Macrococcoides caseolyticum strain FDAARGOS_868]
MARRFKKQFSKDDGFTLIEMLLVLLVISILIIVIIPNIAKQSKTVQAKGCEAQVKMVQGQIEAYRIDTGKTPSTVNELVP
EYLKENQVKCKDGTDIIINNGEALLGA

Nucleotide


Download         Length: 324 bp        

>NTDB_id=513632 I6G25_RS01995 WP_041636417.1 379173..379496(+) (comGC) [Macrococcoides caseolyticum strain FDAARGOS_868]
ATGGCGCGCAGGTTTAAAAAACAGTTTAGTAAGGATGATGGATTTACTTTAATTGAAATGTTATTAGTATTGCTCGTAAT
TTCGATTTTAATTATCGTCATTATTCCAAACATCGCTAAACAATCTAAGACTGTACAAGCTAAAGGATGCGAAGCTCAGG
TAAAGATGGTACAAGGTCAGATCGAAGCCTATCGGATCGATACTGGTAAAACACCGTCTACAGTAAATGAGCTTGTTCCT
GAATATTTGAAAGAAAATCAAGTGAAATGTAAAGATGGAACAGACATAATAATCAATAATGGTGAGGCATTATTAGGTGC
TTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

55.789

88.785

0.495
  comGC Staphylococcus aureus N315

55.789

88.785

0.495
  comGC Bacillus subtilis subsp. subtilis str. 168

45.652

85.981

0.393