Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | I6G25_RS01985 | Genome accession | NZ_CP065729 |
| Coordinates | 377156..378127 (+) | Length | 323 a.a. |
| NCBI ID | WP_012657092.1 | Uniprot ID | B9E6S6 |
| Organism | Macrococcoides caseolyticum strain FDAARGOS_868 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 372156..383127
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G25_RS01945 (I6G25_01945) | - | 372244..372798 (+) | 555 | WP_157820970.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| I6G25_RS01950 (I6G25_01950) | - | 372795..374222 (+) | 1428 | WP_197932706.1 | rhomboid family intramembrane serine protease | - |
| I6G25_RS01955 (I6G25_01955) | - | 374227..374418 (+) | 192 | WP_103214485.1 | YqgQ family protein | - |
| I6G25_RS01960 (I6G25_01960) | - | 374415..375383 (+) | 969 | WP_103214484.1 | ROK family glucokinase | - |
| I6G25_RS01965 (I6G25_01965) | - | 375383..375694 (+) | 312 | WP_086038848.1 | MTH1187 family thiamine-binding protein | - |
| I6G25_RS01970 (I6G25_01970) | - | 375720..375959 (-) | 240 | WP_041636024.1 | DUF2759 domain-containing protein | - |
| I6G25_RS01975 (I6G25_01975) | - | 376049..376669 (+) | 621 | WP_103214483.1 | MBL fold metallo-hydrolase | - |
| I6G25_RS01980 (I6G25_01980) | - | 376696..376944 (-) | 249 | WP_041636023.1 | DUF2626 domain-containing protein | - |
| I6G25_RS01985 (I6G25_01985) | comGA | 377156..378127 (+) | 972 | WP_012657092.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| I6G25_RS01990 (I6G25_01990) | comGB | 378102..379151 (+) | 1050 | WP_181451716.1 | competence type IV pilus assembly protein ComGB | - |
| I6G25_RS01995 (I6G25_01995) | comGC | 379173..379496 (+) | 324 | WP_041636417.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| I6G25_RS02000 (I6G25_02000) | - | 379489..379914 (+) | 426 | WP_012657089.1 | type II secretion system protein | - |
| I6G25_RS02005 (I6G25_02005) | - | 379901..380143 (+) | 243 | WP_133422303.1 | hypothetical protein | - |
| I6G25_RS02010 (I6G25_02010) | - | 380088..380540 (+) | 453 | WP_101140317.1 | competence type IV pilus minor pilin ComGF | - |
| I6G25_RS02015 (I6G25_02015) | - | 380701..381207 (+) | 507 | WP_101140318.1 | shikimate kinase | - |
| I6G25_RS02020 (I6G25_02020) | gcvT | 381345..382430 (+) | 1086 | WP_101140329.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 323 a.a. Molecular weight: 37136.78 Da Isoelectric Point: 6.0532
>NTDB_id=513631 I6G25_RS01985 WP_012657092.1 377156..378127(+) (comGA) [Macrococcoides caseolyticum strain FDAARGOS_868]
MEKLFNEIIEQAILQSASDIHFIPCDKNVSIKFRVQGDIEEYSDIDDILFKKLLSYIKFTAHLDVSEKNKAQSGIIHFNL
DNLRYNIRASTLPRSLGDEACVLRIIRQSFIDEYQTDDQILFDQMKKSSGIIIISGPTGSGKSTLMYQLVHFAKDTLKRQ
VISIEDPVEQHLDGIIQVNVNEKAEITYQTAIKAILRCDPDIIMLGEIRDSVVAQQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINAVDLYQSINLIINQRLIKKRDEKERILAYEFLTKKDIEKYLKNKHINYRTLADILKEMYETNQISQHEFEK
FDL
MEKLFNEIIEQAILQSASDIHFIPCDKNVSIKFRVQGDIEEYSDIDDILFKKLLSYIKFTAHLDVSEKNKAQSGIIHFNL
DNLRYNIRASTLPRSLGDEACVLRIIRQSFIDEYQTDDQILFDQMKKSSGIIIISGPTGSGKSTLMYQLVHFAKDTLKRQ
VISIEDPVEQHLDGIIQVNVNEKAEITYQTAIKAILRCDPDIIMLGEIRDSVVAQQVINAGLSGHLVLTTLHANDCIGAL
FRLKEMGINAVDLYQSINLIINQRLIKKRDEKERILAYEFLTKKDIEKYLKNKHINYRTLADILKEMYETNQISQHEFEK
FDL
Nucleotide
Download Length: 972 bp
>NTDB_id=513631 I6G25_RS01985 WP_012657092.1 377156..378127(+) (comGA) [Macrococcoides caseolyticum strain FDAARGOS_868]
ATGGAGAAATTATTCAATGAAATAATAGAGCAGGCAATTTTACAAAGTGCATCAGATATACACTTCATTCCTTGTGATAA
AAATGTATCTATTAAATTTAGGGTACAAGGTGATATCGAAGAATATAGTGACATCGACGATATATTATTTAAAAAATTAC
TTTCATATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCTCAGAGTGGGATAATACATTTTAATCTG
GATAACTTACGATATAATATTCGCGCATCTACTTTACCTCGTTCATTAGGCGATGAAGCATGTGTATTGAGAATCATCAG
ACAAAGTTTTATAGATGAATATCAGACAGATGATCAGATATTGTTCGATCAGATGAAAAAATCAAGCGGTATAATTATTA
TTAGTGGGCCAACTGGAAGTGGTAAGAGTACATTAATGTATCAACTTGTACATTTTGCAAAGGACACATTGAAACGCCAA
GTAATTTCAATAGAAGATCCTGTGGAGCAGCATCTTGACGGTATCATACAAGTTAATGTTAACGAAAAAGCAGAAATAAC
ATATCAAACCGCAATTAAGGCAATCCTTAGATGTGATCCAGATATCATTATGCTAGGTGAAATAAGAGATTCGGTCGTAG
CACAGCAAGTTATCAATGCGGGGCTGAGTGGTCATTTAGTTTTAACGACATTACATGCGAATGATTGTATTGGCGCATTA
TTTCGGTTAAAAGAAATGGGAATTAATGCTGTTGATCTTTATCAAAGTATCAATTTGATAATCAATCAAAGACTGATTAA
AAAAAGAGATGAAAAGGAGCGTATTCTAGCCTATGAATTTCTGACAAAAAAGGATATTGAAAAATATTTAAAGAATAAGC
ACATAAACTATAGAACGTTGGCTGACATACTAAAGGAGATGTATGAAACAAATCAGATTTCACAACATGAATTTGAAAAA
TTTGATCTTTAA
ATGGAGAAATTATTCAATGAAATAATAGAGCAGGCAATTTTACAAAGTGCATCAGATATACACTTCATTCCTTGTGATAA
AAATGTATCTATTAAATTTAGGGTACAAGGTGATATCGAAGAATATAGTGACATCGACGATATATTATTTAAAAAATTAC
TTTCATATATTAAATTTACAGCACATCTTGATGTATCAGAAAAGAATAAGGCTCAGAGTGGGATAATACATTTTAATCTG
GATAACTTACGATATAATATTCGCGCATCTACTTTACCTCGTTCATTAGGCGATGAAGCATGTGTATTGAGAATCATCAG
ACAAAGTTTTATAGATGAATATCAGACAGATGATCAGATATTGTTCGATCAGATGAAAAAATCAAGCGGTATAATTATTA
TTAGTGGGCCAACTGGAAGTGGTAAGAGTACATTAATGTATCAACTTGTACATTTTGCAAAGGACACATTGAAACGCCAA
GTAATTTCAATAGAAGATCCTGTGGAGCAGCATCTTGACGGTATCATACAAGTTAATGTTAACGAAAAAGCAGAAATAAC
ATATCAAACCGCAATTAAGGCAATCCTTAGATGTGATCCAGATATCATTATGCTAGGTGAAATAAGAGATTCGGTCGTAG
CACAGCAAGTTATCAATGCGGGGCTGAGTGGTCATTTAGTTTTAACGACATTACATGCGAATGATTGTATTGGCGCATTA
TTTCGGTTAAAAGAAATGGGAATTAATGCTGTTGATCTTTATCAAAGTATCAATTTGATAATCAATCAAAGACTGATTAA
AAAAAGAGATGAAAAGGAGCGTATTCTAGCCTATGAATTTCTGACAAAAAAGGATATTGAAAAATATTTAAAGAATAAGC
ACATAAACTATAGAACGTTGGCTGACATACTAAAGGAGATGTATGAAACAAATCAGATTTCACAACATGAATTTGAAAAA
TTTGATCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
48.923 |
100 |
0.492 |
| comGA | Staphylococcus aureus N315 |
48.923 |
100 |
0.492 |
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
34.77 |
100 |
0.375 |