Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   I6G28_RS04040 Genome accession   NZ_CP065726
Coordinates   815667..816242 (+) Length   191 a.a.
NCBI ID   WP_111727130.1    Uniprot ID   A0A7T3BN87
Organism   Neisseria cinerea strain FDAARGOS_871     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 810667..821242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G28_RS04010 (I6G28_04010) - 810709..811044 (+) 336 WP_111727134.1 general secretion pathway protein GspG -
  I6G28_RS04015 (I6G28_04015) - 811157..811738 (-) 582 WP_003777725.1 superoxide dismutase -
  I6G28_RS04020 (I6G28_04020) dnaB 811902..813308 (+) 1407 WP_111727132.1 replicative DNA helicase -
  I6G28_RS04025 (I6G28_04025) pilH 813465..814133 (+) 669 WP_108043581.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6G28_RS04030 (I6G28_04030) pilV 814157..814765 (+) 609 WP_167395535.1 type IV pilus modification protein PilV Machinery gene
  I6G28_RS04035 (I6G28_04035) pilJ 814762..815688 (+) 927 WP_108043583.1 PilW family protein Machinery gene
  I6G28_RS04040 (I6G28_04040) pilK 815667..816242 (+) 576 WP_111727130.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6G28_RS04045 (I6G28_04045) pilX 816251..816730 (+) 480 WP_197711733.1 PilX family type IV pilin Machinery gene
  I6G28_RS04050 (I6G28_04050) - 816797..817105 (-) 309 WP_108043586.1 AzlD family protein -
  I6G28_RS04055 (I6G28_04055) - 817102..817812 (-) 711 WP_108043587.1 AzlC family ABC transporter permease -
  I6G28_RS04060 (I6G28_04060) dut 817958..818410 (+) 453 WP_003674996.1 dUTP diphosphatase -
  I6G28_RS04065 (I6G28_04065) dapC 818488..819675 (+) 1188 WP_108043588.1 succinyldiaminopimelate transaminase -
  I6G28_RS04070 (I6G28_04070) yaaA 819831..820610 (+) 780 WP_108043589.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21257.42 Da        Isoelectric Point: 7.5665

>NTDB_id=513580 I6G28_RS04040 WP_111727130.1 815667..816242(+) (pilK) [Neisseria cinerea strain FDAARGOS_871]
MRKQNALMKVSLPCRQKGFALFIVLMVMIVVAFLVVIAAQSYNTEQRISANDSDRKLALTLAEAALRDGELHVLDLEEKE
VTFGENCTDGLCAAPDVRTTTDSKEKFGNITVEGNPKIEAWKRFCPNNSANLCIDQGKEYGKGVEGVSKMPRYIIEYLGV
ENSRNIYRVTAKAWGKNSNTVVILQSYVSNE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=513580 I6G28_RS04040 WP_111727130.1 815667..816242(+) (pilK) [Neisseria cinerea strain FDAARGOS_871]
ATGCGCAAACAGAACGCTTTAATGAAAGTTTCACTCCCTTGCAGGCAGAAAGGGTTTGCACTGTTCATCGTTTTGATGGT
GATGATAGTAGTAGCTTTCCTGGTTGTTATTGCCGCCCAGTCTTACAATACCGAGCAAAGGATAAGTGCCAATGATTCGG
ACAGGAAATTGGCATTGACTTTAGCAGAAGCCGCGTTGAGGGATGGTGAGCTTCATGTTTTGGATTTAGAGGAGAAAGAA
GTTACATTCGGTGAGAATTGCACGGATGGGTTGTGCGCTGCTCCGGATGTACGGACGACTACCGATTCTAAGGAAAAATT
CGGTAATATTACGGTTGAAGGCAATCCTAAGATTGAAGCATGGAAGCGTTTTTGCCCTAATAATTCGGCAAACCTCTGTA
TCGACCAAGGAAAGGAATATGGAAAAGGGGTGGAGGGTGTCAGTAAGATGCCGCGTTACATTATCGAGTATCTGGGTGTA
GAAAATAGTCGGAATATTTACCGCGTTACCGCTAAGGCGTGGGGAAAAAACTCTAATACCGTAGTTATCCTTCAGTCTTA
TGTGAGTAATGAATGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(89-188)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3BN87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

68.342

100

0.712