Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   I6G28_RS04035 Genome accession   NZ_CP065726
Coordinates   814762..815688 (+) Length   308 a.a.
NCBI ID   WP_108043583.1    Uniprot ID   -
Organism   Neisseria cinerea strain FDAARGOS_871     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 809762..820688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G28_RS04010 (I6G28_04010) - 810709..811044 (+) 336 WP_111727134.1 general secretion pathway protein GspG -
  I6G28_RS04015 (I6G28_04015) - 811157..811738 (-) 582 WP_003777725.1 superoxide dismutase -
  I6G28_RS04020 (I6G28_04020) dnaB 811902..813308 (+) 1407 WP_111727132.1 replicative DNA helicase -
  I6G28_RS04025 (I6G28_04025) pilH 813465..814133 (+) 669 WP_108043581.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6G28_RS04030 (I6G28_04030) pilV 814157..814765 (+) 609 WP_167395535.1 type IV pilus modification protein PilV Machinery gene
  I6G28_RS04035 (I6G28_04035) pilJ 814762..815688 (+) 927 WP_108043583.1 PilW family protein Machinery gene
  I6G28_RS04040 (I6G28_04040) pilK 815667..816242 (+) 576 WP_111727130.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6G28_RS04045 (I6G28_04045) pilX 816251..816730 (+) 480 WP_197711733.1 PilX family type IV pilin Machinery gene
  I6G28_RS04050 (I6G28_04050) - 816797..817105 (-) 309 WP_108043586.1 AzlD family protein -
  I6G28_RS04055 (I6G28_04055) - 817102..817812 (-) 711 WP_108043587.1 AzlC family ABC transporter permease -
  I6G28_RS04060 (I6G28_04060) dut 817958..818410 (+) 453 WP_003674996.1 dUTP diphosphatase -
  I6G28_RS04065 (I6G28_04065) dapC 818488..819675 (+) 1188 WP_108043588.1 succinyldiaminopimelate transaminase -
  I6G28_RS04070 (I6G28_04070) yaaA 819831..820610 (+) 780 WP_108043589.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 308 a.a.        Molecular weight: 33505.37 Da        Isoelectric Point: 9.0395

>NTDB_id=513579 I6G28_RS04035 WP_108043583.1 814762..815688(+) (pilJ) [Neisseria cinerea strain FDAARGOS_871]
MKRKILVIPNGCDSGMKGFTIVEFLVAALLSMIVLMAVGSSYFTSRRLNNAASERLSAQQDLRNAATLIVRDARMAGNFG
CFNMAVNPSSAVISDKTEKNPFFALKKGNLDKLIPVAESTDIKYPGFSQSGKALIFQYGIDDLDASAETVVVSSCSAIAK
PGKKISTLGEAKSELKITDNTQNGNITRQKHEVNAYAVGKISNEEGLFRFQLKDNGQWGNPQLLVKKINKMDIRYIYVSD
CSLVEGDGKVEKFKYTDTFDISQAAVTPAEVEILLNSGKLAASADNEVYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 927 bp        

>NTDB_id=513579 I6G28_RS04035 WP_108043583.1 814762..815688(+) (pilJ) [Neisseria cinerea strain FDAARGOS_871]
ATGAAACGTAAAATACTAGTCATACCAAATGGTTGTGATAGTGGCATGAAAGGTTTTACCATTGTTGAATTTCTGGTCGC
AGCCCTGCTCAGTATGATTGTTTTGATGGCAGTCGGTTCAAGTTACTTCACATCCCGAAGATTAAATAATGCGGCAAGCG
AGCGTCTTTCTGCTCAGCAGGATTTGCGTAATGCGGCAACATTGATTGTTCGCGATGCAAGAATGGCGGGTAATTTCGGC
TGTTTTAATATGGCTGTAAATCCTTCAAGTGCCGTTATTTCCGATAAAACTGAGAAAAATCCCTTCTTTGCCTTGAAAAA
GGGTAATTTGGATAAACTGATTCCCGTTGCCGAATCCACGGATATTAAATATCCGGGCTTTAGTCAGTCTGGAAAGGCAT
TGATTTTCCAGTACGGTATTGATGATCTTGATGCGAGTGCCGAGACTGTTGTGGTTAGCAGTTGTTCTGCAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGGGGGAAGCAAAGAGTGAATTAAAGATTACGGACAATACACAAAATGGAAATATCAC
CCGTCAAAAACATGAGGTTAATGCCTATGCGGTCGGCAAGATTTCTAATGAGGAAGGTTTGTTCCGTTTTCAATTGAAGG
ATAATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCCGAT
TGTTCTCTGGTAGAGGGTGATGGAAAAGTAGAGAAGTTCAAATATACGGATACATTTGATATTTCGCAGGCGGCAGTTAC
ACCTGCTGAGGTTGAGATTTTGTTGAATAGCGGTAAGCTTGCTGCCTCTGCCGACAATGAAGTTTATGCTTACCGTATCA
ATGCGACAATACGCGGGGGGAATGTATGCGCAAACAGAACGCTTTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

66.772

100

0.685