Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   I6G28_RS04025 Genome accession   NZ_CP065726
Coordinates   813465..814133 (+) Length   222 a.a.
NCBI ID   WP_108043581.1    Uniprot ID   -
Organism   Neisseria cinerea strain FDAARGOS_871     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808465..819133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G28_RS04000 (I6G28_04000) cysW 808742..809602 (-) 861 WP_108043578.1 sulfate ABC transporter permease subunit CysW -
  I6G28_RS04005 (I6G28_04005) cysT 809687..810523 (-) 837 WP_111727136.1 sulfate ABC transporter permease subunit CysT -
  I6G28_RS04010 (I6G28_04010) - 810709..811044 (+) 336 WP_111727134.1 general secretion pathway protein GspG -
  I6G28_RS04015 (I6G28_04015) - 811157..811738 (-) 582 WP_003777725.1 superoxide dismutase -
  I6G28_RS04020 (I6G28_04020) dnaB 811902..813308 (+) 1407 WP_111727132.1 replicative DNA helicase -
  I6G28_RS04025 (I6G28_04025) pilH 813465..814133 (+) 669 WP_108043581.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6G28_RS04030 (I6G28_04030) pilV 814157..814765 (+) 609 WP_167395535.1 type IV pilus modification protein PilV Machinery gene
  I6G28_RS04035 (I6G28_04035) pilJ 814762..815688 (+) 927 WP_108043583.1 PilW family protein Machinery gene
  I6G28_RS04040 (I6G28_04040) pilK 815667..816242 (+) 576 WP_111727130.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6G28_RS04045 (I6G28_04045) pilX 816251..816730 (+) 480 WP_197711733.1 PilX family type IV pilin Machinery gene
  I6G28_RS04050 (I6G28_04050) - 816797..817105 (-) 309 WP_108043586.1 AzlD family protein -
  I6G28_RS04055 (I6G28_04055) - 817102..817812 (-) 711 WP_108043587.1 AzlC family ABC transporter permease -
  I6G28_RS04060 (I6G28_04060) dut 817958..818410 (+) 453 WP_003674996.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24955.58 Da        Isoelectric Point: 9.8051

>NTDB_id=513577 I6G28_RS04025 WP_108043581.1 813465..814133(+) (pilH) [Neisseria cinerea strain FDAARGOS_871]
MYIRRQQGFTLIELLIVMVIATIMAMMAFPSMSQWIASRRVASQAEQIANLLRFSRGEAVRLNVPVYICPVQVKKDGTAN
NKCDFSKKEQGMLAFGDKNGDKAYGGDTKDVSIRSVVLNDDIKDKRINYTFNHVAFGKAKPATDRVVWTFNQNGTFGYTD
DQNLTSKSRFSYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDQRTMCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=513577 I6G28_RS04025 WP_108043581.1 813465..814133(+) (pilH) [Neisseria cinerea strain FDAARGOS_871]
ATGTATATACGAAGACAACAAGGTTTCACGCTGATAGAGCTGCTCATTGTGATGGTTATTGCAACCATTATGGCAATGAT
GGCTTTCCCCAGTATGAGTCAATGGATTGCATCGCGTCGCGTTGCAAGTCAGGCGGAGCAGATTGCCAATCTCTTGCGTT
TTTCAAGGGGAGAGGCGGTTCGGCTCAATGTCCCTGTCTATATCTGTCCTGTTCAGGTTAAAAAAGACGGTACGGCCAAC
AATAAATGTGACTTCAGTAAGAAGGAGCAGGGAATGTTGGCTTTCGGCGATAAGAATGGCGATAAGGCATACGGAGGGGA
TACAAAAGATGTTTCCATCCGCAGTGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAACCATG
TCGCTTTCGGTAAAGCCAAGCCGGCTACAGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGGAC
GACCAGAATCTTACAAGCAAATCCAGATTTTCTTATTCCGACGGTTATATTCAAATTGTTCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCCGTAGTCTTGATTGACAGCAGTGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCAGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

76.018

99.55

0.757