Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   I6G28_RS01120 Genome accession   NZ_CP065726
Coordinates   214752..215201 (+) Length   149 a.a.
NCBI ID   WP_003678313.1    Uniprot ID   A0A7T3BM96
Organism   Neisseria cinerea strain FDAARGOS_871     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 209752..220201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G28_RS01115 (I6G28_01115) - 214277..214665 (+) 389 Protein_208 helix-hairpin-helix domain-containing protein -
  I6G28_RS01120 (I6G28_01120) comP 214752..215201 (+) 450 WP_003678313.1 type IV pilin protein Machinery gene
  I6G28_RS01125 (I6G28_01125) - 215262..216323 (-) 1062 WP_230698763.1 5'-nucleotidase -
  I6G28_RS01130 (I6G28_01130) - 216454..216606 (-) 153 WP_167395565.1 hypothetical protein -
  I6G28_RS01135 (I6G28_01135) - 216860..217069 (+) 210 WP_111727439.1 helix-turn-helix domain-containing protein -
  I6G28_RS01140 (I6G28_01140) - 217080..217826 (+) 747 WP_111727438.1 hypothetical protein -
  I6G28_RS01145 (I6G28_01145) - 217818..218891 (-) 1074 WP_111727437.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16739.53 Da        Isoelectric Point: 9.1383

>NTDB_id=513570 I6G28_RS01120 WP_003678313.1 214752..215201(+) (comP) [Neisseria cinerea strain FDAARGOS_871]
MTDNRGFTLVELISVVLILSVLALIAYPIYSNYIEKARISAVRSALLENAHFMEKFYLQNGTFKQTSTKWPKLPIQEAEG
FCIRLNGVARGALDSKFMLKAVAIDKNKEPRIIKMNENLVTFVCKGSTSSCDDGLDYFRGNDKGCTLFK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=513570 I6G28_RS01120 WP_003678313.1 214752..215201(+) (comP) [Neisseria cinerea strain FDAARGOS_871]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTAGTTTTGATATTGTCTGTACTTGCTCTAATTGCTTA
TCCAATCTACAGTAATTATATTGAAAAGGCTAGAATAAGTGCGGTACGCTCGGCTTTATTAGAGAATGCACATTTTATGG
AAAAGTTTTATCTACAAAATGGGACATTTAAACAAACATCTACTAAGTGGCCAAAGTTACCGATTCAAGAGGCTGAGGGT
TTTTGTATTCGGTTGAATGGGGTTGCGAGAGGTGCGTTGGACAGTAAGTTTATGTTGAAGGCAGTTGCCATAGATAAAAA
TAAAGAGCCTCGTATTATTAAGATGAATGAGAATTTGGTAACTTTTGTTTGTAAAGGATCTACCAGTTCTTGTGATGATG
GATTAGATTATTTTAGGGGTAATGATAAGGGTTGTACATTATTTAAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3BM96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

85.906

100

0.859
  comP Neisseria gonorrhoeae MS11

85.235

100

0.852
  comP Neisseria subflava NJ9703

50.667

100

0.51