Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   KWY97_RS05980 Genome accession   NZ_CP078114
Coordinates   1147163..1147636 (-) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   B4RKG7
Organism   Neisseria gonorrhoeae strain 98D159     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1142163..1152636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY97_RS05955 (KWY97_05955) yaaA 1143265..1144044 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  KWY97_RS05960 (KWY97_05960) dapC 1144200..1145387 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  KWY97_RS05965 (KWY97_05965) dut 1145459..1145911 (-) 453 WP_003701071.1 dUTP diphosphatase -
  KWY97_RS05970 (KWY97_05970) - 1146077..1146788 (+) 712 Protein_1175 AzlC family ABC transporter permease -
  KWY97_RS05975 (KWY97_05975) - 1146785..1147093 (+) 309 WP_025456241.1 AzlD family protein -
  KWY97_RS05980 (KWY97_05980) pilL 1147163..1147636 (-) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  KWY97_RS05985 (KWY97_05985) pilK 1147638..1148249 (-) 612 WP_218446806.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY97_RS05990 (KWY97_05990) pilJ 1148228..1149196 (-) 969 WP_003702438.1 PilW family protein Machinery gene
  KWY97_RS05995 (KWY97_05995) pilV/pilI 1149193..1149801 (-) 609 WP_218446807.1 type IV pilus modification protein PilV Regulator
  KWY97_RS06000 (KWY97_06000) pilH 1149833..1150498 (-) 666 WP_218446905.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY97_RS06005 (KWY97_06005) dnaB 1150806..1152212 (-) 1407 WP_218446808.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=513535 KWY97_RS05980 WP_012503482.1 1147163..1147636(-) (pilL) [Neisseria gonorrhoeae strain 98D159]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=513535 KWY97_RS05980 WP_012503482.1 1147163..1147636(-) (pilL) [Neisseria gonorrhoeae strain 98D159]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854