Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   KWY97_RS05990 Genome accession   NZ_CP078114
Coordinates   1148228..1149196 (-) Length   322 a.a.
NCBI ID   WP_003702438.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 98D159     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1143228..1154196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KWY97_RS05955 (KWY97_05955) yaaA 1143265..1144044 (-) 780 WP_003687925.1 peroxide stress protein YaaA -
  KWY97_RS05960 (KWY97_05960) dapC 1144200..1145387 (-) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  KWY97_RS05965 (KWY97_05965) dut 1145459..1145911 (-) 453 WP_003701071.1 dUTP diphosphatase -
  KWY97_RS05970 (KWY97_05970) - 1146077..1146788 (+) 712 Protein_1175 AzlC family ABC transporter permease -
  KWY97_RS05975 (KWY97_05975) - 1146785..1147093 (+) 309 WP_025456241.1 AzlD family protein -
  KWY97_RS05980 (KWY97_05980) pilL 1147163..1147636 (-) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  KWY97_RS05985 (KWY97_05985) pilK 1147638..1148249 (-) 612 WP_218446806.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KWY97_RS05990 (KWY97_05990) pilJ 1148228..1149196 (-) 969 WP_003702438.1 PilW family protein Machinery gene
  KWY97_RS05995 (KWY97_05995) pilV/pilI 1149193..1149801 (-) 609 WP_218446807.1 type IV pilus modification protein PilV Regulator
  KWY97_RS06000 (KWY97_06000) pilH 1149833..1150498 (-) 666 WP_218446905.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KWY97_RS06005 (KWY97_06005) dnaB 1150806..1152212 (-) 1407 WP_218446808.1 replicative DNA helicase -
  KWY97_RS06010 (KWY97_06010) - 1152376..1152957 (+) 582 WP_003698180.1 superoxide dismutase -
  KWY97_RS06015 (KWY97_06015) - 1153189..1153698 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35364.36 Da        Isoelectric Point: 8.9648

>NTDB_id=513537 KWY97_RS05990 WP_003702438.1 1148228..1149196(-) (pilJ) [Neisseria gonorrhoeae strain 98D159]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQSNLVKPGAKQENPLFSLKRSGMDKQLIPVAESTDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGMIAGEEGLFRFQLDDKGKWGNPQLLAK
KIKRMDVQYIYVSGCPEDEDAGKEEQFKYTDRFDRSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANR
TL

Nucleotide


Download         Length: 969 bp        

>NTDB_id=513537 KWY97_RS05990 WP_003702438.1 1148228..1149196(-) (pilJ) [Neisseria gonorrhoeae strain 98D159]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGTAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCACAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
TGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAA
AAGATTAAACGTATGGATGTGCAGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATT
CAAATATACGGATAGATTCGACAGATCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGA
TTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGA
ACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

78.154

100

0.789