Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6G42_RS09180 Genome accession   NZ_CP065707
Coordinates   1869601..1871559 (-) Length   652 a.a.
NCBI ID   WP_038805609.1    Uniprot ID   A0A7T3DZA7
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1872501..1884180 1869601..1871559 flank 942


Gene organization within MGE regions


Location: 1869601..1884180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS09180 (I6G42_09180) amiA 1869601..1871559 (-) 1959 WP_038805609.1 peptide ABC transporter substrate-binding protein Regulator
  I6G42_RS10175 - 1872199..1872504 (-) 306 WP_269643438.1 LPXTG cell wall anchor domain-containing protein -
  I6G42_RS10180 (I6G42_09190) - 1872830..1873021 (+) 192 WP_197906206.1 hypothetical protein -
  I6G42_RS10185 (I6G42_09195) - 1873130..1875073 (+) 1944 WP_197906187.1 chordopoxvirus G3 family protein -
  I6G42_RS10190 (I6G42_09200) - 1875869..1876219 (+) 351 WP_269642810.1 hypothetical protein -
  I6G42_RS10195 (I6G42_09205) - 1876353..1876583 (+) 231 WP_197906188.1 hypothetical protein -
  I6G42_RS10200 (I6G42_09210) - 1876593..1876823 (+) 231 WP_197906189.1 hypothetical protein -
  I6G42_RS10205 (I6G42_09215) - 1876851..1877543 (+) 693 WP_197906190.1 hypothetical protein -
  I6G42_RS10210 (I6G42_09220) - 1877571..1878173 (+) 603 WP_197906191.1 hypothetical protein -
  I6G42_RS10215 (I6G42_09225) - 1878201..1878341 (+) 141 WP_197906192.1 hypothetical protein -
  I6G42_RS10220 (I6G42_09230) - 1878281..1878979 (+) 699 WP_197906193.1 hypothetical protein -
  I6G42_RS10225 (I6G42_09235) - 1879097..1879246 (+) 150 WP_197906194.1 hypothetical protein -
  I6G42_RS10230 (I6G42_09240) - 1879364..1879513 (+) 150 WP_197906194.1 hypothetical protein -
  I6G42_RS10350 - 1879660..1883070 (-) 3411 Protein_1817 hypothetical protein -
  I6G42_RS10275 (I6G42_09285) - 1883067..1883210 (-) 144 WP_197906197.1 hypothetical protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72981.33 Da        Isoelectric Point: 4.7817

>NTDB_id=513321 I6G42_RS09180 WP_038805609.1 1869601..1871559(-) (amiA) [Streptococcus oralis strain FDAARGOS_885]
MKKSKAKYLTLASVVLSAGILLSACGNSASSSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSKDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYSGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFTEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQDATSFYLNFNLDRKSYNFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDKTVEMTNKTEIQEISSMKQSIESVLGTENVVIDIQQLATEDYDS
SGYLAQTAAQKDFDLYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEVQAWLVDSALAIPNVSKGGTPSLRKTVPFSAPFSQAGNKGVESYKYLKLQDKTVTTAEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=513321 I6G42_RS09180 WP_038805609.1 1869601..1871559(-) (amiA) [Streptococcus oralis strain FDAARGOS_885]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTGGCAAGTGTCGTGTTAAGCGCGGGTATCCTACTAAGCGCATGTGGGAA
CTCAGCAAGTTCATCTAAAACATACAATTATGTTTACTCTAGTGATCCATCTAGTTTGAACTATCTAGCAGAGAACCGTG
CAACAACTAATGATATCGTTACCAATCTGGTAGATGGTTTGATGGAAAATGACCAATATGGTAACTATGTTCCATCTTTG
GCAGAGGATTGGACCGTTTCCAAGGACGGTTTGACTTATACCTACAAACTTCGTAAAGATGCCAAGTGGTATACATACGA
AGGTGAAGAATACGCACCTGTAACTGCTCAAGACTTTGTGACAGGTTTGAAATATGCGGCAGATAAAAAATCTGAAGCCT
TGTACTTGGTTCAAGAGTCTGTAGCAGGTTTGGATGACTATATCAACGGTAAAACAACAGACTTTTCAACTGTCGGTGTG
AAGGCGATTGATGACCAAACAGTTCAGTATACTTTGACTCGACCAGAACCTTATTGGAATTCTAAAACTACGTCCACTAT
TCTCTTCCCTGTTAATGCTGATTTCTTGAAATCAAAAGGAGATGACTTTGGTAAGGTGGATCCTTCTAGTATTTTGTACA
GTGGACCTTTCTTGATGAAGTCCTTTGTTTCAAAATCTGTTATCGAGTACAAGAAAAATCCGAACTACTGGGATGCTAAA
AATGTCTTTGTGGACGATGTGAAATTGACCTACTATGATGGAAGTGACCAAGATGCCCTAGCACGTAACTTTACAGAAGG
AGTATACAGCTACGCACGTCTCTATCCAAATAGCTCAAGTTTTGAAGGGATTAAAGAGAAGAATAAGGACAATATCATCT
ACAGCATGCAAGATGCCACTTCTTTCTACTTGAACTTTAACCTAGATAGAAAATCTTATAATTTCACTTCTAAAACGACT
GACATCGAAAAGAAATCTACCCAAGAAGCAGTTCTGAATAAAAACTTCCGCCAAGCTATCAATTTTGCCTACAACCGTAC
GGCCTATGGGGCACAATCTCAAGGGGAAGACGGAGCAACGAAGATTATTCGTAACCTAGTTGTACCTCCTACATTTGTAA
GTATCAACGGAAAAGACTTTGGTGATGTTGTTTCCGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCTGATGCTCAGGATCCTTACTACAATCCTGACAAGGCTAAAGCTAAGTTTGCGGAAGCTAAGAAAGAACTAGAAGCCAA
GGGTGTTCAGTTCCCAATTCACTTGGATAAGACTGTTGAAATGACCAATAAGACAGAAATTCAAGAAATTAGCTCAATGA
AGCAATCCATCGAATCTGTTCTTGGAACTGAGAACGTGGTTATCGATATCCAACAGTTGGCAACAGAGGATTATGATAGC
TCTGGTTATTTAGCTCAGACAGCAGCCCAGAAGGATTTTGACCTATACAATGGTGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGCTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACCTTGGTCTAGAACCAGGTGAAGTCAATG
ACAAGGCCAAGGCAGTTGGACTTGATACCTACACTCAAATGTTGGAAGAAGCCAATAAAGAGCAAGATCCAGCAAAACGT
TATGAAAAATATGCTGAAGTTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTAAGGGTGGAACACC
TAGCTTGAGAAAGACAGTTCCATTCTCTGCACCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTACCTCA
AGTTACAAGATAAGACTGTGACGACTGCTGAGTATGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAGTCAAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DZA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.558
  amiA3 Streptococcus thermophilus LMG 18311

55.235

100

0.558
  amiA3 Streptococcus thermophilus LMD-9

55.235

100

0.558