Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I6G43_RS08810 Genome accession   NZ_CP065706
Coordinates   1833768..1835729 (-) Length   653 a.a.
NCBI ID   WP_038805804.1    Uniprot ID   A0A7T2ZNE3
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828768..1840729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS08785 (I6G43_08785) - 1828989..1829285 (-) 297 WP_000701743.1 hypothetical protein -
  I6G43_RS08790 (I6G43_08790) - 1829478..1830332 (-) 855 WP_000755763.1 SDR family NAD(P)-dependent oxidoreductase -
  I6G43_RS08795 (I6G43_08795) rnmV 1830344..1830907 (-) 564 WP_000660007.1 ribonuclease M5 -
  I6G43_RS08800 (I6G43_08800) - 1830904..1831680 (-) 777 WP_000575593.1 TatD family hydrolase -
  I6G43_RS08805 (I6G43_08805) - 1831832..1833676 (+) 1845 WP_000488826.1 APC family permease -
  I6G43_RS08810 (I6G43_08810) amiA 1833768..1835729 (-) 1962 WP_038805804.1 peptide ABC transporter substrate-binding protein Regulator
  I6G43_RS08815 (I6G43_08815) rpmH 1835873..1836007 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  I6G43_RS08820 (I6G43_08820) - 1836153..1837367 (-) 1215 WP_000666480.1 pyridoxal phosphate-dependent aminotransferase -
  I6G43_RS08825 (I6G43_08825) - 1837512..1837811 (-) 300 WP_038805805.1 hypothetical protein -
  I6G43_RS08830 (I6G43_08830) - 1837978..1838430 (+) 453 WP_000079159.1 universal stress protein -
  I6G43_RS08835 (I6G43_08835) - 1838466..1839851 (-) 1386 WP_000453130.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72955.96 Da        Isoelectric Point: 4.6854

>NTDB_id=513244 I6G43_RS08810 WP_038805804.1 1833768..1835729(-) (amiA) [Streptococcus oralis strain FDAARGOS_886]
MKKSKALLLGAGILSASFLMVACSSAQSNTDKTYSYVFASNPDTLDYITSTRGSTSSITTNLIDGLLENDKYGNLVPSMA
QSWKVSKDGLTYTYKIRQGAKWYTSEGEEYAEVTAHDFVTGLKYAADKKAENLYLVRDSIKGLADYVEGKTSDFETVGVK
AVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFTSKSLIEFEKNPNYWDKDN
VKIEKVKLSFYDGSDQDSLARGFLEGNYTDGRIFPTSSVFDQLKKGNEDKITYTPQDAVTFYYLFNVNRQSYNQTMKQTD
KEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQIGGKNFGDAVNEKMVNYGTEWANVNLN
DAQPAFLNADKAKAEFAKAKESLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGSDNIVIDVIQLSPDEKDNA
TFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPDSGSQLKNLGLTPGKDNDVKEKIGLSTYKKLLDEADKEVENTQVR
YEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYLELQKDPVTAKQYQELYEKWQKEKVES
NKKAQEDLANHIQ

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=513244 I6G43_RS08810 WP_038805804.1 1833768..1835729(-) (amiA) [Streptococcus oralis strain FDAARGOS_886]
ATGAAGAAATCAAAAGCCCTCCTACTAGGGGCTGGAATTTTGAGCGCAAGCTTCTTGATGGTGGCTTGTAGTTCGGCACA
ATCAAATACAGATAAAACCTACTCGTATGTATTTGCTAGCAATCCAGATACATTAGACTATATCACTTCGACACGTGGTT
CAACCTCTAGCATTACGACAAACTTGATTGATGGTTTGTTGGAAAATGATAAGTACGGCAACCTCGTTCCTTCTATGGCG
CAGTCATGGAAGGTATCAAAGGATGGCTTGACCTATACCTACAAAATCCGCCAAGGGGCTAAGTGGTATACCTCTGAAGG
AGAAGAATACGCTGAAGTGACAGCTCATGACTTTGTGACAGGTCTTAAGTATGCAGCGGATAAAAAGGCTGAGAACTTGT
ACTTGGTACGGGATTCAATCAAAGGTTTGGCAGATTATGTCGAAGGGAAAACATCTGACTTTGAGACGGTTGGAGTCAAG
GCAGTGGACGACTATACTCTCCAATACACCTTGAACAAGCCGGAGTCTTATTGGAATTCAAAGACAACAGGGGGAATTTT
GAGCCCTGTCAATGAAGCCTTTTTGAAATCTAAGGGAGATGACTTTGGAAGTGTTACCCCATCTAGTATCCTGTCAAATG
GGCCATACTTGTTCAAGTCTTTCACATCAAAATCTTTAATTGAGTTTGAAAAGAACCCTAATTACTGGGATAAGGACAAT
GTGAAAATTGAGAAGGTAAAACTTTCCTTCTATGATGGTTCAGACCAAGATAGTTTGGCTCGAGGATTCTTAGAAGGCAA
CTACACAGATGGCCGTATCTTCCCGACAAGTTCTGTCTTTGACCAGTTGAAAAAAGGGAATGAAGATAAGATTACCTATA
CTCCTCAGGATGCTGTGACTTTCTACTATCTCTTCAATGTCAACCGTCAAAGTTACAATCAAACCATGAAACAGACGGAT
AAAGAAAAAACCGATTCGCGTGCAGCTATGCAAAACAAGGACTTCCGTCAGGCGATTAACTTTGCCTTTGACCGTCATGC
CTACGCCGCACAGACAAATGGAGAAGATGGAGCTGACCGTATCCTTCGAAACACAGTCACACCAAGCAATTTTGTTCAAA
TTGGTGGGAAAAACTTCGGAGATGCTGTCAATGAAAAGATGGTCAACTATGGCACAGAGTGGGCTAATGTCAATCTAAAC
GACGCTCAGCCTGCCTTCTTGAATGCTGATAAAGCCAAGGCAGAATTTGCCAAAGCCAAAGAAAGCTTACAGGCAGAAGG
TGTGACTTTCCCAATCCATCTAGACATGCCAGTGGACCAGACTGCTAAGTTGGACGTACAACAAGCCAGTTCTTTCAAGC
AGACGGTTGAGGAGACACTTGGATCAGATAATATTGTTATCGATGTGATTCAACTTTCTCCAGACGAGAAAGACAATGCA
ACCTTCTTTGCTGACACAGCTGAACAAAAGGACTATGACATCGACATCTCAGGTTGGAGTGGAGATTATTCAGATCCGAA
AACCTATCTTGACCTCTTGGATCCAGACTCTGGTTCTCAGTTAAAAAATCTTGGCTTAACTCCAGGAAAAGACAATGATG
TCAAGGAAAAAATCGGTCTCTCTACCTACAAGAAGTTGTTGGATGAGGCAGATAAAGAAGTTGAAAACACTCAGGTTCGC
TATGAGAAATTTGCCGAAGTTCAAGCATGGCTAACAGATAGTGCTCTCTTTCTGCCGGTTCAAAGTGGAGGAGCTAATCC
AATCTTCCGTAAGACTGTACCGTTCACAGGAGCCTTCTCATTTGTCGGACACAAAGGGGATGCGGACAACTACAAATACC
TTGAGTTGCAAAAAGATCCCGTGACTGCGAAACAGTACCAAGAGCTTTATGAAAAATGGCAAAAAGAAAAAGTTGAGTCC
AACAAAAAAGCCCAAGAAGATTTAGCTAACCACATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T2ZNE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.708

100

0.56
  amiA3 Streptococcus thermophilus LMD-9

55.403

100

0.557
  amiA3 Streptococcus thermophilus LMG 18311

55.099

100

0.554