Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   I6G43_RS02320 Genome accession   NZ_CP065706
Coordinates   477290..479272 (+) Length   660 a.a.
NCBI ID   WP_038806403.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 472290..484272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS02295 (I6G43_02295) - 472938..473578 (+) 641 Protein_424 UDP-galactopyranose mutase -
  I6G43_RS02300 (I6G43_02300) rfbA 473606..474475 (+) 870 WP_038806407.1 glucose-1-phosphate thymidylyltransferase RfbA -
  I6G43_RS02305 (I6G43_02305) - 474476..475072 (+) 597 WP_038806406.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  I6G43_RS02310 (I6G43_02310) rfbB 475082..476128 (+) 1047 WP_038806405.1 dTDP-glucose 4,6-dehydratase -
  I6G43_RS02315 (I6G43_02315) rfbD 476190..477044 (-) 855 WP_038806404.1 dTDP-4-dehydrorhamnose reductase -
  I6G43_RS02320 (I6G43_02320) amiA3 477290..479272 (+) 1983 WP_038806403.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73180.69 Da        Isoelectric Point: 4.6895

>NTDB_id=513207 I6G43_RS02320 WP_038806403.1 477290..479272(+) (amiA3) [Streptococcus oralis strain FDAARGOS_886]
MKSSRLLTLAGVTLLAATTLAACSGSGSSAKGEKTFSYIYETDPDNLNYLTTNKAATANITSNVVDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTIRKDAKWYTSEGEEYAAVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KENVHIGKVKLSYWDGQDTNKPTEAFKDGSFTMARLFPTSASYPETEKAFKDNIVYTQQDSTTFLVGINIDRQSYQHTSK
TADEQKASTKKALLNKDFRQALAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWSNV
NLDDAQDGLYNPEKAKAEFAKAKTALQAEGVKFPIHLDMPVDQTNTTKVQRVQSLKQSLEATLGTDNVVVDIQQLQKDDV
LNITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALIIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLEVQDKPVTTEEYQKAQEKW
MKEKEESNKKAQEDLAKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=513207 I6G43_RS02320 WP_038806403.1 477290..479272(+) (amiA3) [Streptococcus oralis strain FDAARGOS_886]
ATGAAAAGTTCAAGACTACTTACCCTTGCGGGCGTGACATTATTGGCGGCGACTACTTTAGCTGCATGCTCTGGATCAGG
TTCGAGCGCCAAAGGTGAGAAGACATTCTCATACATTTATGAGACGGATCCTGATAACCTCAACTATTTGACAACTAATA
AAGCAGCTACAGCAAATATTACCAGCAACGTGGTTGATGGTCTGCTAGAAAATGACCGCTACGGGAACTTTGTGCCGTCT
ATGGCTGAGGATTGGTCAGTATCCAAGGATGGATTGACTTACACTTATACTATCCGTAAGGATGCAAAATGGTATACTTC
TGAAGGTGAAGAATACGCGGCAGTCAAAGCTCAAGACTTTGTAACAGGACTTAAATATGCTGCTGATAAAAAATCTGATG
GTCTTTATTTAGTTCAAGAATCAATCAAAGGATTGGACGCCTATGTTAAAGGAGAAATTACAGACTTCTCTCAAGTAGGA
ATCAAGGCCCTTGATGATTATACAGTTCAGTACACATTGAACAAGCCAGAAAGCTTCTGGAATTCTAAGACAACGATGGG
AGTTTTGGCTCCAGTAAATGAAGAGTTCTTGAACTCCAAAGGGGATGACTTCGCCAAAGGGACAGATCCTAGTAGTATTC
TCTATAATGGACCATTCTTGCTCAAATCAATCGTAGCCAAATCTTCTGTTGAGTTTGAAAAGAATCCAAACTATTGGGAT
AAAGAGAATGTCCACATTGGCAAGGTGAAATTGTCATACTGGGATGGCCAAGATACCAACAAACCAACTGAAGCCTTCAA
AGATGGCAGCTTTACAATGGCACGTCTCTTCCCAACAAGCGCGAGCTACCCAGAGACTGAAAAAGCCTTTAAAGACAATA
TTGTTTACACACAACAAGATTCAACAACTTTCTTAGTTGGTATCAATATCGACCGTCAGTCTTATCAACATACTTCTAAG
ACAGCTGATGAACAAAAAGCATCTACCAAGAAAGCTCTTCTAAATAAAGATTTCCGTCAAGCACTTGCCTTTGGTTTTGA
TAGAACTGCCTATGCCTCTCAAGTAAACGGTGCAAGTGGTGCGACTAAACTGCTTCGCAACTTGTTTGTCCCACCTACAT
TTGTTCAAGCAGATGGTAAAAACTTTGGTGAGTTGGTCAAAGAAAAATTGGTGACATACGGTGACGAGTGGAGCAACGTG
AACTTGGATGATGCCCAAGATGGTCTTTACAATCCAGAAAAAGCCAAAGCAGAATTCGCCAAGGCTAAGACAGCTCTTCA
AGCAGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGACCAAACAAACACAACGAAAGTTCAACGTGTGCAAT
CTTTGAAACAGTCACTTGAAGCAACTTTGGGAACAGATAATGTAGTTGTGGATATCCAACAACTTCAAAAAGACGATGTC
TTGAACATCACTTACTTTGCTGAAACAGCTGCTGGTGAAGATTGGGATATCTCAGATAACGTTGGTTGGTCTCCAGACTT
TGCGGATCCATCTACCTACCTTGATATCATCAAGCCATCTGTCGGAGAAAATACGAAGACTTACCTAGGATTTGACTCTG
GAACCAACAACGCTGCTGCCAAGCAAGTTGGTTTGGAAGACTACGAAAAAATGGTTGTGGAAGCTGGGGAAGAAACTACT
GACGTTTCAAAACGTTATGAAAAATATGCTGCTGCCCAAGCTTGGTTGACAGATAGTGCCTTGATCATCCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACTCTTCCGTTTGCTTACTCAGGTAACAAAGGTATGAGCG
AAGCCCTTTTGTACAAATATCTAGAAGTACAAGATAAGCCAGTAACAACAGAAGAATACCAAAAAGCCCAAGAAAAATGG
ATGAAAGAAAAAGAAGAGTCGAATAAAAAGGCTCAAGAAGATCTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.607

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.002

100

0.591
  amiA Streptococcus salivarius strain HSISS4

58.85

100

0.589