Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   I6G44_RS07350 Genome accession   NZ_CP065702
Coordinates   1465147..1465545 (-) Length   132 a.a.
NCBI ID   WP_232245082.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_887     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460147..1470545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G44_RS07310 (I6G44_07310) - 1460169..1461035 (+) 867 WP_010906309.1 RluA family pseudouridine synthase -
  I6G44_RS07315 (I6G44_07315) - 1461074..1461883 (-) 810 WP_010906310.1 metal ABC transporter permease -
  I6G44_RS07320 (I6G44_07320) - 1461876..1462613 (-) 738 WP_010906311.1 metal ABC transporter ATP-binding protein -
  I6G44_RS07325 (I6G44_07325) - 1462790..1463632 (-) 843 WP_197932535.1 metal ABC transporter substrate-binding protein -
  I6G44_RS07330 (I6G44_07330) - 1463629..1464066 (-) 438 WP_010906313.1 zinc-dependent MarR family transcriptional regulator -
  I6G44_RS07335 (I6G44_07335) comGG 1464147..1464431 (-) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  I6G44_RS07340 (I6G44_07340) comGF 1464470..1464916 (-) 447 WP_031296844.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6G44_RS07345 (I6G44_07345) comGE 1464879..1465175 (-) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6G44_RS07350 (I6G44_07350) comGD 1465147..1465545 (-) 399 WP_232245082.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6G44_RS07355 (I6G44_07355) comGC 1465538..1465921 (-) 384 WP_010906318.1 competence type IV pilus major pilin ComGC Machinery gene
  I6G44_RS07360 (I6G44_07360) comGB 1465935..1467008 (-) 1074 WP_010906319.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6G44_RS07365 (I6G44_07365) comGA 1466902..1467840 (-) 939 WP_010906320.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15213.81 Da        Isoelectric Point: 8.0130

>NTDB_id=513150 I6G44_RS07350 WP_232245082.1 1465147..1465545(-) (comGD) [Lactococcus lactis strain FDAARGOS_887]
MTKAFTLLESLLVLLIISFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICEDRSITI
PKEVAVKDFTVKFDDKGENSSLQKLTISLHYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 399 bp        

>NTDB_id=513150 I6G44_RS07350 WP_232245082.1 1465147..1465545(-) (comGD) [Lactococcus lactis strain FDAARGOS_887]
ATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTATTTCTTTTATCACAACTCTTTTTTCTTTAGA
AATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCTATAAAAGGAGTCAAGAAG
ATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAAGATAGAAGTATCACAATT
CCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAGCTTACAAAAACTCACAAT
TTCTTTACATTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTAAAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

66.667

100

0.667
  comYD Streptococcus mutans UA140

40.625

96.97

0.394
  comYD Streptococcus mutans UA159

40.625

96.97

0.394
  comYD Streptococcus gordonii str. Challis substr. CH1

40.625

96.97

0.394