Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6G71_RS05405 Genome accession   NZ_CP065653
Coordinates   1072272..1072745 (-) Length   157 a.a.
NCBI ID   WP_002249319.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_914     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067272..1077745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G71_RS05385 (I6G71_05385) yaaA 1067729..1068508 (-) 780 WP_002236895.1 peroxide stress protein YaaA -
  I6G71_RS11650 - 1068557..1068682 (-) 126 Protein_1046 IS5/IS1182 family transposase -
  I6G71_RS05390 (I6G71_05390) dapC 1068770..1069957 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  I6G71_RS05395 (I6G71_05395) dut 1070033..1070485 (-) 453 WP_002226436.1 dUTP diphosphatase -
  I6G71_RS05400 (I6G71_05400) - 1070628..1071056 (+) 429 Protein_1049 AzlC family ABC transporter permease -
  I6G71_RS05405 (I6G71_05405) pilX 1072272..1072745 (-) 474 WP_002249319.1 PilX family type IV pilin Machinery gene
  I6G71_RS05410 (I6G71_05410) pilK 1072750..1073349 (-) 600 WP_002242528.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6G71_RS05415 (I6G71_05415) pilJ 1073328..1074302 (-) 975 WP_082308618.1 PilW family protein Machinery gene
  I6G71_RS05420 (I6G71_05420) pilI 1074299..1074907 (-) 609 WP_002242521.1 type IV pilus modification protein PilV Machinery gene
  I6G71_RS05425 (I6G71_05425) pilH 1074939..1075604 (-) 666 WP_002242526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6G71_RS05430 (I6G71_05430) dnaB 1075906..1077312 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17293.01 Da        Isoelectric Point: 9.4513

>NTDB_id=512678 I6G71_RS05405 WP_002249319.1 1072272..1072745(-) (pilX) [Neisseria meningitidis strain FDAARGOS_914]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIERGYQSQLYTEMVGINNVLKQIILKNPQDDNDTLKIRLEALASGYKM
NPKIAKKYSVSVAFANTEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=512678 I6G71_RS05405 WP_002249319.1 1072272..1072745(-) (pilX) [Neisseria meningitidis strain FDAARGOS_914]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAGAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGATTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGATACGACTGGAAGCGCTTGCCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGCTTGGTCGG
TGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCGCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

87.898

100

0.879
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866