Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   I6G71_RS05410 Genome accession   NZ_CP065653
Coordinates   1072750..1073349 (-) Length   199 a.a.
NCBI ID   WP_002242528.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_914     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067750..1078349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G71_RS11650 - 1068557..1068682 (-) 126 Protein_1046 IS5/IS1182 family transposase -
  I6G71_RS05390 (I6G71_05390) dapC 1068770..1069957 (-) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  I6G71_RS05395 (I6G71_05395) dut 1070033..1070485 (-) 453 WP_002226436.1 dUTP diphosphatase -
  I6G71_RS05400 (I6G71_05400) - 1070628..1071056 (+) 429 Protein_1049 AzlC family ABC transporter permease -
  I6G71_RS05405 (I6G71_05405) pilX 1072272..1072745 (-) 474 WP_002249319.1 PilX family type IV pilin Machinery gene
  I6G71_RS05410 (I6G71_05410) pilK 1072750..1073349 (-) 600 WP_002242528.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6G71_RS05415 (I6G71_05415) pilJ 1073328..1074302 (-) 975 WP_082308618.1 PilW family protein Machinery gene
  I6G71_RS05420 (I6G71_05420) pilI 1074299..1074907 (-) 609 WP_002242521.1 type IV pilus modification protein PilV Machinery gene
  I6G71_RS05425 (I6G71_05425) pilH 1074939..1075604 (-) 666 WP_002242526.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  I6G71_RS05430 (I6G71_05430) dnaB 1075906..1077312 (-) 1407 WP_002219448.1 replicative DNA helicase -
  I6G71_RS05435 (I6G71_05435) - 1077475..1078062 (+) 588 WP_002220670.1 superoxide dismutase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21925.69 Da        Isoelectric Point: 5.0730

>NTDB_id=512679 I6G71_RS05410 WP_002242528.1 1072750..1073349(-) (pilK) [Neisseria meningitidis strain FDAARGOS_914]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNTNHGNEEAFDNIVVQGNPTVEAVKRSCPANSTDLCIDNKGMEYKKGTQSVSKPPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=512679 I6G71_RS05410 WP_002242528.1 1072750..1073349(-) (pilK) [Neisseria meningitidis strain FDAARGOS_914]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
AATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATCATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGCAAAGTGTCAGCAAACCACCGCGCTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.177

100

0.899