Detailed information NTG0512404

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: I6G86_RS07905
• Genome accession: NZ_CP065637
• Coordinates: 1522520..1523776 (+)
• Length: 418 a.a.
• NCBI ID: WP_042218689.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain FDAARGOS_929
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1517520..1528776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G86_RS07880 (I6G86_07885)	glyQ	1517674..1518642 (-)	969	WP_004257927.1	glycine--tRNA ligase subunit alpha	-
I6G86_RS07885 (I6G86_07890)	-	1518656..1519435 (-)	780	WP_019292766.1	formate/nitrite transporter family protein	-
I6G86_RS07890 (I6G86_07895)	-	1519754..1520776 (+)	1023	WP_042218693.1	alpha/beta hydrolase	-
I6G86_RS07895 (I6G86_07900)	-	1520806..1521828 (-)	1023	WP_023889525.1	DUF475 domain-containing protein	-
I6G86_RS07900 (I6G86_07905)	-	1521842..1522465 (-)	624	WP_042218691.1	YigZ family protein	-
I6G86_RS07905 (I6G86_07910)	comFA	1522520..1523776 (+)	1257	WP_042218689.1	DEAD/DEAH box helicase	Machinery gene
I6G86_RS07910 (I6G86_07915)	-	1523773..1524417 (+)	645	WP_042218687.1	ComF family protein	-
I6G86_RS07915 (I6G86_07920)	-	1524420..1524881 (-)	462	WP_042218685.1	diacylglycerol kinase family protein	-
I6G86_RS07920 (I6G86_07925)	ybeY	1524865..1525353 (-)	489	WP_042218684.1	rRNA maturation RNase YbeY	-
I6G86_RS07925 (I6G86_07930)	-	1525363..1525836 (-)	474	WP_004257950.1	NUDIX hydrolase	-
I6G86_RS07930 (I6G86_07935)	-	1525838..1526797 (-)	960	WP_004257953.1	PhoH family protein	-
I6G86_RS07935 (I6G86_07940)	ald	1526915..1528021 (-)	1107	WP_042218682.1	alanine dehydrogenase	-
I6G86_RS07940 (I6G86_07945)	rpmA	1528372..1528656 (-)	285	WP_004257956.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 47919.74 Da
• Isoelectric Point: 10.0108

>NTDB_id=512404 I6G86_RS07905 WP_042218689.1 1522520..1523776(+) (comFA) [Lactococcus garvieae strain FDAARGOS_929]
MDELYGRLLLQKELTKLPDKATLFDGMQDVSKTVMMCNRCGKKIKKKEVLLPVGAYYCPHCIQMGRVRSDEKLYHLPQEN
FSAASFLNWQGKLTASQQHVSDSLVKLHQQQKTVLVQAVTGAGKTEMIYQSIDNTLKKGKAVGLTSPRIDVCLELYHRLK
RDFSCPISLLHGKSEKYSRSPLVIATTHQLMRFRHAFDLLILDEVDAFPFPDNEMLYFALTQARKPSSSLIYLTATTTDN
LEKQVKLGQIEKLQLPRRFHGFPLVLPQFFWQSKFYKMVKKQRESGFPLLIFVPEIRQGEKLCQDLQSNFPHEEIAFVAS
TSLERLEAVERFRQGNISILVSTTILERGVTFPKVDVFVFQSHHYNFTRSSLIQIAGRVGRSTERPEGKVFFFHLGKTTA
MLEAYKNIRNMNKAGGFL

Nucleotide

• Length: 1257 bp

>NTDB_id=512404 I6G86_RS07905 WP_042218689.1 1522520..1523776(+) (comFA) [Lactococcus garvieae strain FDAARGOS_929]
ATGGATGAATTATATGGTAGACTCCTTTTACAAAAAGAATTGACGAAACTTCCAGATAAAGCAACACTTTTTGATGGGAT
GCAAGATGTTTCCAAAACAGTGATGATGTGCAACCGCTGTGGCAAAAAGATCAAGAAAAAAGAGGTCCTTCTCCCTGTTG
GTGCTTATTATTGTCCTCATTGTATTCAAATGGGACGTGTTCGCTCGGATGAAAAACTTTACCACCTTCCACAGGAGAAT
TTTTCAGCAGCTTCTTTTCTCAACTGGCAGGGAAAACTCACAGCATCTCAGCAACATGTATCCGATAGCCTAGTCAAATT
GCATCAGCAACAAAAAACAGTACTGGTACAGGCGGTTACTGGTGCAGGAAAAACCGAAATGATTTATCAGAGCATTGATA
ACACTCTTAAAAAAGGAAAAGCTGTTGGTTTAACTAGCCCGCGTATTGATGTCTGTCTAGAGCTCTATCATCGCTTAAAG
AGAGATTTTTCTTGTCCCATCTCGCTTTTGCACGGAAAGAGTGAAAAATACAGCCGCTCACCACTCGTAATTGCAACGAC
ACATCAGCTTATGCGTTTTCGCCATGCCTTTGACTTACTCATTCTTGATGAGGTTGATGCCTTTCCCTTTCCAGACAATG
AAATGCTTTATTTTGCGCTGACTCAAGCCCGTAAACCTTCTTCAAGCTTGATTTATCTTACTGCAACCACCACCGATAAT
TTGGAAAAACAAGTCAAATTAGGACAAATCGAGAAGCTACAGCTTCCACGACGTTTTCATGGTTTTCCTCTGGTACTCCC
GCAATTTTTTTGGCAAAGCAAGTTTTACAAAATGGTCAAAAAACAACGCGAATCTGGTTTTCCCTTACTTATCTTTGTTC
CTGAAATAAGACAGGGAGAAAAACTCTGCCAAGATTTACAGAGTAATTTTCCTCATGAAGAAATTGCTTTTGTAGCGTCA
ACAAGTCTTGAACGCTTAGAGGCTGTGGAACGCTTTCGTCAGGGTAATATTTCTATCCTTGTCTCAACGACCATTTTAGA
ACGTGGTGTAACTTTCCCTAAGGTTGACGTTTTTGTGTTTCAAAGTCACCACTATAATTTCACAAGATCAAGCCTCATCC
AAATTGCCGGACGAGTAGGTCGAAGTACCGAAAGACCTGAGGGTAAGGTATTTTTCTTTCATCTAGGAAAAACAACAGCG
ATGTTGGAAGCCTATAAGAATATCAGAAATATGAATAAAGCAGGAGGGTTCCTATGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (92-236)

• Helicase conserved C-terminal domain (Helicase_C) (274-382)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	57.398	93.78	0.538
comFA/cflA	Streptococcus mitis SK321	52.113	100	0.531
comFA/cflA	Streptococcus pneumoniae TIGR4	52.113	100	0.531
comFA/cflA	Streptococcus pneumoniae Rx1	52.113	100	0.531
comFA/cflA	Streptococcus pneumoniae D39	52.113	100	0.531
comFA/cflA	Streptococcus pneumoniae R6	52.113	100	0.531
comFA/cflA	Streptococcus mitis NCTC 12261	51.174	100	0.522
comFA	Bacillus subtilis subsp. subtilis str. 168	38.861	96.651	0.376
comFA	Latilactobacillus sakei subsp. sakei 23K	38.539	94.976	0.366