Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   JNUCC51_RS07735 Genome accession   NZ_CP065545
Coordinates   1549249..1549962 (-) Length   237 a.a.
NCBI ID   WP_337991510.1    Uniprot ID   -
Organism   Lysinibacillus sp. JNUCC-51     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1544249..1554962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC51_RS07725 (JNUCC51_07645) - 1545130..1546623 (-) 1494 WP_337991508.1 helix-turn-helix domain-containing protein -
  JNUCC51_RS07730 (JNUCC51_07650) - 1547848..1549248 (-) 1401 WP_337991509.1 HAMP domain-containing sensor histidine kinase -
  JNUCC51_RS07735 (JNUCC51_07655) scnR 1549249..1549962 (-) 714 WP_337991510.1 response regulator transcription factor Regulator
  JNUCC51_RS07740 (JNUCC51_07660) - 1550041..1550391 (-) 351 WP_337991511.1 YxeA family protein -
  JNUCC51_RS07745 (JNUCC51_07665) - 1550412..1551143 (-) 732 WP_337991512.1 ABC transporter permease -
  JNUCC51_RS07750 (JNUCC51_07670) - 1551156..1551908 (-) 753 WP_337991513.1 ABC transporter permease -
  JNUCC51_RS07755 (JNUCC51_07675) - 1551905..1552822 (-) 918 WP_337991514.1 ABC transporter ATP-binding protein -
  JNUCC51_RS07760 (JNUCC51_07680) - 1553110..1553982 (+) 873 WP_337991515.1 glycine betaine ABC transporter substrate-binding protein -
  JNUCC51_RS07765 (JNUCC51_07685) - 1554316..1554933 (-) 618 WP_134025311.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26862.22 Da        Isoelectric Point: 5.2267

>NTDB_id=511831 JNUCC51_RS07735 WP_337991510.1 1549249..1549962(-) (scnR) [Lysinibacillus sp. JNUCC-51]
MENLKDKKILIVDDEPEIRKMIEGFLRKDGFFRIYSATDCSSALSICQTEKPDLAILDVMLPDGDGFSLLSSIRQFSEMP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLTAILKRVYSSPISEKLSVFALGEQTINLESAVVYKNQKELPL
TAKEHAILVKLYENQGRIVTSDALCQAVWGDDSYGYENTLMVHIRRVREKIEMDPSKPIYLLTVRGLGYKLLVKETR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=511831 JNUCC51_RS07735 WP_337991510.1 1549249..1549962(-) (scnR) [Lysinibacillus sp. JNUCC-51]
GTGGAAAATTTAAAAGATAAAAAAATATTAATTGTAGATGATGAACCAGAAATCAGAAAAATGATTGAAGGTTTTTTGAG
AAAAGATGGTTTTTTCCGAATTTATAGTGCAACTGATTGCAGCTCGGCCCTGTCAATCTGCCAAACAGAAAAGCCGGATC
TAGCAATTCTTGATGTCATGCTACCTGATGGCGATGGATTCTCACTTTTGTCTTCCATCAGACAATTCTCGGAAATGCCA
GTCCTTTTTCTTTCGGCACGGGGCGAGGACGAAGATCGTTTACTTGGACTCGGGCTAGGAGCAGATGATTATATTGTGAA
GCCGTTTTTACCACGAGAACTAGTATTACGGCTTACAGCAATTCTGAAAAGGGTTTACTCCTCTCCTATTTCGGAGAAGT
TGTCTGTTTTCGCACTCGGAGAACAGACAATTAATCTGGAAAGTGCAGTCGTATACAAGAATCAAAAGGAGCTACCATTG
ACGGCAAAGGAGCATGCTATTCTTGTGAAATTGTATGAAAATCAGGGGAGAATTGTTACAAGTGATGCCTTATGTCAGGC
CGTTTGGGGAGACGACAGTTACGGTTATGAAAATACATTGATGGTACATATTAGGCGAGTTCGTGAAAAAATCGAGATGG
ACCCATCCAAACCAATTTATCTTCTCACTGTTAGGGGTCTAGGATATAAACTGTTAGTGAAGGAGACAAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

51.948

97.468

0.506
  vicR Streptococcus mutans UA159

41.485

96.624

0.401
  micA Streptococcus pneumoniae Cp1015

41.228

96.203

0.397