Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I4Q39_RS00040 Genome accession   NZ_CP065535
Coordinates   9360..9872 (+) Length   170 a.a.
NCBI ID   WP_060789733.1    Uniprot ID   -
Organism   Enterococcus durans strain KCTC 13289     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4360..14872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4Q39_RS00030 (I4Q39_00030) gyrA 6189..8690 (+) 2502 WP_016177139.1 DNA gyrase subunit A -
  I4Q39_RS00035 (I4Q39_00035) rpsF 9011..9310 (+) 300 WP_005875806.1 30S ribosomal protein S6 -
  I4Q39_RS00040 (I4Q39_00040) ssb 9360..9872 (+) 513 WP_060789733.1 single-stranded DNA-binding protein Machinery gene
  I4Q39_RS00045 (I4Q39_00045) rpsR 9898..10134 (+) 237 WP_005875810.1 30S ribosomal protein S18 -
  I4Q39_RS00050 (I4Q39_00050) - 10383..12356 (+) 1974 WP_016177140.1 DHH family phosphoesterase -
  I4Q39_RS00055 (I4Q39_00055) rplI 12362..12814 (+) 453 WP_005875813.1 50S ribosomal protein L9 -
  I4Q39_RS00060 (I4Q39_00060) dnaB 13444..14811 (+) 1368 WP_005875816.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18640.17 Da        Isoelectric Point: 4.6856

>NTDB_id=511690 I4Q39_RS00040 WP_060789733.1 9360..9872(+) (ssb) [Enterococcus durans strain KCTC 13289]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRSASENRQQSVGSQSSGQSANNFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=511690 I4Q39_RS00040 WP_060789733.1 9360..9872(+) (ssb) [Enterococcus durans strain KCTC 13289]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACGAAAGATCCAGATTTACGATATACATCAAGTGGCACTGCAGTTGC
AACGTTCACTTTAGCTGTCAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATCAACTGTGTGATTT
GGCGTAAATCAGCAGAAACATTAGCAAACTATGCTCGCAAAGGTACCCTTTTAGGTGTTACCGGACGTATCCAAACTCGT
TCTTATGATAATCAACAAGGACAACGTGTATATGTAACAGAAGTAGTTGCTGAAAATTTCCAATTATTGGAAAGTCGTTC
TGCATCTGAAAATCGTCAACAAAGCGTCGGTTCTCAAAGTTCTGGTCAATCGGCAAATAATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.234

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.425

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376